Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03525

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03520 and CSW01_03525 are separated by 2 nucleotidesCSW01_03525 and CSW01_03530 are separated by 9 nucleotidesCSW01_03530 and CSW01_03535 are separated by 28 nucleotides CSW01_03520: CSW01_03520 - RNA pyrophosphohydrolase, at 715,824 to 716,405 _03520 CSW01_03525: CSW01_03525 - phosphoenolpyruvate-protein phosphotransferase PtsP, at 716,408 to 718,654 _03525 CSW01_03530: CSW01_03530 - sulfite exporter TauE/SafE family protein, at 718,664 to 719,458 _03530 CSW01_03535: CSW01_03535 - prolipoprotein diacylglyceryl transferase, at 719,487 to 720,302 _03535 Position (kb) 716 717 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 715.440 kb on + strandat 715.491 kb on + strandat 715.491 kb on + strandat 715.491 kb on + strandat 715.821 kb on + strandat 715.821 kb on + strandat 716.064 kb on - strand, within CSW01_03520at 716.271 kb on - strand, within CSW01_03520at 716.400 kb on + strandat 716.400 kb on + strandat 716.400 kb on + strandat 716.408 kb on - strandat 716.408 kb on - strandat 716.419 kb on + strandat 716.433 kb on - strandat 716.433 kb on - strandat 716.494 kb on - strandat 716.514 kb on - strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.516 kb on - strandat 716.517 kb on + strandat 716.520 kb on + strandat 716.520 kb on + strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.528 kb on - strandat 716.551 kb on - strandat 716.584 kb on + strandat 716.592 kb on - strandat 716.656 kb on + strand, within CSW01_03525at 716.656 kb on + strand, within CSW01_03525at 716.672 kb on + strand, within CSW01_03525at 716.752 kb on - strand, within CSW01_03525at 716.780 kb on - strand, within CSW01_03525at 716.834 kb on - strand, within CSW01_03525at 716.937 kb on + strand, within CSW01_03525at 716.967 kb on - strand, within CSW01_03525at 717.011 kb on + strand, within CSW01_03525at 717.014 kb on - strand, within CSW01_03525at 717.019 kb on - strand, within CSW01_03525at 717.159 kb on + strand, within CSW01_03525at 717.159 kb on + strand, within CSW01_03525at 717.159 kb on + strand, within CSW01_03525at 717.159 kb on + strand, within CSW01_03525at 717.167 kb on - strand, within CSW01_03525at 717.167 kb on - strand, within CSW01_03525at 717.167 kb on - strand, within CSW01_03525at 717.167 kb on - strand, within CSW01_03525at 717.272 kb on - strand, within CSW01_03525at 717.288 kb on - strand, within CSW01_03525at 717.421 kb on + strand, within CSW01_03525at 717.429 kb on - strand, within CSW01_03525at 717.429 kb on - strand, within CSW01_03525at 717.448 kb on - strand, within CSW01_03525at 717.464 kb on + strand, within CSW01_03525at 717.468 kb on + strand, within CSW01_03525at 717.583 kb on + strand, within CSW01_03525at 717.669 kb on - strand, within CSW01_03525at 717.685 kb on + strand, within CSW01_03525at 717.695 kb on - strand, within CSW01_03525at 717.758 kb on - strand, within CSW01_03525at 717.782 kb on + strand, within CSW01_03525at 717.782 kb on + strand, within CSW01_03525at 717.785 kb on - strand, within CSW01_03525at 717.790 kb on - strand, within CSW01_03525at 717.839 kb on - strand, within CSW01_03525at 717.842 kb on - strand, within CSW01_03525at 717.863 kb on + strand, within CSW01_03525at 717.863 kb on + strand, within CSW01_03525at 717.865 kb on + strand, within CSW01_03525at 717.871 kb on + strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.879 kb on - strand, within CSW01_03525at 717.879 kb on - strand, within CSW01_03525at 717.925 kb on + strand, within CSW01_03525at 717.933 kb on - strand, within CSW01_03525at 717.933 kb on - strand, within CSW01_03525at 718.033 kb on + strand, within CSW01_03525at 718.044 kb on + strand, within CSW01_03525at 718.046 kb on - strand, within CSW01_03525at 718.099 kb on + strand, within CSW01_03525at 718.134 kb on + strand, within CSW01_03525at 718.208 kb on - strand, within CSW01_03525at 718.272 kb on + strand, within CSW01_03525at 718.321 kb on + strand, within CSW01_03525at 718.345 kb on + strand, within CSW01_03525at 718.347 kb on + strand, within CSW01_03525at 718.353 kb on - strand, within CSW01_03525at 718.375 kb on - strand, within CSW01_03525at 718.451 kb on + strandat 718.452 kb on + strandat 718.459 kb on - strandat 718.459 kb on - strandat 718.460 kb on - strandat 718.467 kb on + strandat 718.482 kb on + strandat 718.518 kb on + strandat 718.518 kb on + strandat 718.518 kb on + strandat 718.526 kb on - strandat 718.526 kb on - strandat 718.533 kb on + strandat 718.555 kb on + strandat 718.569 kb on - strandat 718.628 kb on - strandat 718.683 kb on - strandat 718.701 kb on + strandat 718.754 kb on - strand, within CSW01_03530at 718.763 kb on + strand, within CSW01_03530at 718.780 kb on + strand, within CSW01_03530at 718.825 kb on + strand, within CSW01_03530at 718.862 kb on - strand, within CSW01_03530at 718.868 kb on + strand, within CSW01_03530at 718.878 kb on + strand, within CSW01_03530at 718.885 kb on + strand, within CSW01_03530at 718.886 kb on - strand, within CSW01_03530at 718.946 kb on + strand, within CSW01_03530at 719.005 kb on - strand, within CSW01_03530at 719.012 kb on - strand, within CSW01_03530at 719.017 kb on + strand, within CSW01_03530at 719.017 kb on + strand, within CSW01_03530at 719.017 kb on + strand, within CSW01_03530at 719.019 kb on + strand, within CSW01_03530at 719.025 kb on - strand, within CSW01_03530at 719.030 kb on + strand, within CSW01_03530at 719.032 kb on + strand, within CSW01_03530at 719.083 kb on + strand, within CSW01_03530at 719.084 kb on - strand, within CSW01_03530at 719.116 kb on + strand, within CSW01_03530at 719.133 kb on + strand, within CSW01_03530at 719.265 kb on + strand, within CSW01_03530at 719.281 kb on - strand, within CSW01_03530at 719.281 kb on - strand, within CSW01_03530at 719.281 kb on - strand, within CSW01_03530at 719.293 kb on - strand, within CSW01_03530at 719.391 kb on + strandat 719.452 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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715,440 + +0.1
715,491 + +1.2
715,491 + -0.6
715,491 + +1.1
715,821 + -0.1
715,821 + -1.0
716,064 - CSW01_03520 0.41 -2.4
716,271 - CSW01_03520 0.77 -1.1
716,400 + -0.1
716,400 + -2.1
716,400 + -0.2
716,408 - +1.6
716,408 - -1.7
716,419 + +2.8
716,433 - -0.4
716,433 - +0.8
716,494 - -0.9
716,514 - -1.5
716,515 + -0.2
716,515 + -0.0
716,515 + +0.8
716,515 + +0.0
716,515 + +1.3
716,515 + -0.3
716,515 + +0.2
716,515 + +0.4
716,516 - +1.7
716,517 + -0.6
716,520 + -0.3
716,520 + -0.2
716,523 - -0.5
716,523 - +0.6
716,523 - +0.5
716,523 - +0.5
716,523 - -0.7
716,523 - -0.2
716,523 - +0.0
716,523 - -0.0
716,523 - -0.1
716,523 - -0.5
716,523 - +0.3
716,528 - +1.5
716,551 - +0.2
716,584 + -0.3
716,592 - -0.6
716,656 + CSW01_03525 0.11 +0.1
716,656 + CSW01_03525 0.11 -0.1
716,672 + CSW01_03525 0.12 +0.2
716,752 - CSW01_03525 0.15 +0.7
716,780 - CSW01_03525 0.17 +0.5
716,834 - CSW01_03525 0.19 -0.0
716,937 + CSW01_03525 0.24 +0.8
716,967 - CSW01_03525 0.25 -0.1
717,011 + CSW01_03525 0.27 -0.1
717,014 - CSW01_03525 0.27 +0.9
717,019 - CSW01_03525 0.27 -0.2
717,159 + CSW01_03525 0.33 -0.1
717,159 + CSW01_03525 0.33 +0.8
717,159 + CSW01_03525 0.33 +0.8
717,159 + CSW01_03525 0.33 +2.6
717,167 - CSW01_03525 0.34 -0.2
717,167 - CSW01_03525 0.34 +0.4
717,167 - CSW01_03525 0.34 -0.7
717,167 - CSW01_03525 0.34 -0.8
717,272 - CSW01_03525 0.38 -0.4
717,288 - CSW01_03525 0.39 +0.2
717,421 + CSW01_03525 0.45 +0.5
717,429 - CSW01_03525 0.45 +1.0
717,429 - CSW01_03525 0.45 +0.7
717,448 - CSW01_03525 0.46 -2.5
717,464 + CSW01_03525 0.47 -2.8
717,468 + CSW01_03525 0.47 -0.2
717,583 + CSW01_03525 0.52 -0.4
717,669 - CSW01_03525 0.56 +0.3
717,685 + CSW01_03525 0.57 +0.1
717,695 - CSW01_03525 0.57 -2.4
717,758 - CSW01_03525 0.60 -0.6
717,782 + CSW01_03525 0.61 -0.3
717,782 + CSW01_03525 0.61 -0.2
717,785 - CSW01_03525 0.61 +1.3
717,790 - CSW01_03525 0.62 -0.0
717,839 - CSW01_03525 0.64 +0.5
717,842 - CSW01_03525 0.64 -0.9
717,863 + CSW01_03525 0.65 +0.0
717,863 + CSW01_03525 0.65 +0.4
717,865 + CSW01_03525 0.65 +0.0
717,871 + CSW01_03525 0.65 -0.3
717,873 - CSW01_03525 0.65 -0.2
717,873 - CSW01_03525 0.65 -0.2
717,873 - CSW01_03525 0.65 +2.5
717,873 - CSW01_03525 0.65 +0.5
717,873 - CSW01_03525 0.65 +1.3
717,879 - CSW01_03525 0.65 -0.1
717,879 - CSW01_03525 0.65 +0.5
717,925 + CSW01_03525 0.68 -0.0
717,933 - CSW01_03525 0.68 -0.7
717,933 - CSW01_03525 0.68 -0.1
718,033 + CSW01_03525 0.72 +0.5
718,044 + CSW01_03525 0.73 -0.3
718,046 - CSW01_03525 0.73 -0.7
718,099 + CSW01_03525 0.75 -0.6
718,134 + CSW01_03525 0.77 +0.2
718,208 - CSW01_03525 0.80 +0.2
718,272 + CSW01_03525 0.83 +0.9
718,321 + CSW01_03525 0.85 +0.2
718,345 + CSW01_03525 0.86 +0.2
718,347 + CSW01_03525 0.86 -2.9
718,353 - CSW01_03525 0.87 +1.5
718,375 - CSW01_03525 0.88 -0.0
718,451 + +0.6
718,452 + +0.8
718,459 - +1.1
718,459 - -0.1
718,460 - -0.3
718,467 + +0.0
718,482 + +0.2
718,518 + -0.3
718,518 + -0.0
718,518 + -0.6
718,526 - +1.2
718,526 - +0.8
718,533 + -1.0
718,555 + -0.2
718,569 - +0.7
718,628 - +0.0
718,683 - +0.7
718,701 + -0.4
718,754 - CSW01_03530 0.11 +1.3
718,763 + CSW01_03530 0.12 -2.5
718,780 + CSW01_03530 0.15 +0.3
718,825 + CSW01_03530 0.20 +0.9
718,862 - CSW01_03530 0.25 -3.2
718,868 + CSW01_03530 0.26 -0.2
718,878 + CSW01_03530 0.27 -1.8
718,885 + CSW01_03530 0.28 -0.3
718,886 - CSW01_03530 0.28 +0.3
718,946 + CSW01_03530 0.35 +0.5
719,005 - CSW01_03530 0.43 +3.0
719,012 - CSW01_03530 0.44 +1.2
719,017 + CSW01_03530 0.44 -2.5
719,017 + CSW01_03530 0.44 -1.2
719,017 + CSW01_03530 0.44 -0.3
719,019 + CSW01_03530 0.45 -0.5
719,025 - CSW01_03530 0.45 -0.4
719,030 + CSW01_03530 0.46 -1.9
719,032 + CSW01_03530 0.46 +1.5
719,083 + CSW01_03530 0.53 +0.9
719,084 - CSW01_03530 0.53 +0.0
719,116 + CSW01_03530 0.57 +1.7
719,133 + CSW01_03530 0.59 -0.0
719,265 + CSW01_03530 0.76 -0.8
719,281 - CSW01_03530 0.78 -0.1
719,281 - CSW01_03530 0.78 -0.8
719,281 - CSW01_03530 0.78 +0.8
719,293 - CSW01_03530 0.79 +0.7
719,391 + -1.3
719,452 - +0.1

Or see this region's nucleotide sequence