Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03195

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03185 and CSW01_03190 are separated by 154 nucleotidesCSW01_03190 and CSW01_03195 are separated by 177 nucleotidesCSW01_03195 and CSW01_03200 are separated by 21 nucleotides CSW01_03185: CSW01_03185 - aconitate hydratase B, at 632,633 to 635,230 _03185 CSW01_03190: CSW01_03190 - hypothetical protein, at 635,385 to 635,765 _03190 CSW01_03195: CSW01_03195 - transcriptional regulator, at 635,943 to 636,281 _03195 CSW01_03200: CSW01_03200 - ammonium transporter, at 636,303 to 637,532 _03200 Position (kb) 635 636 637Strain fitness (log2 ratio) -2 -1 0 1 2at 635.180 kb on + strandat 635.297 kb on + strandat 635.310 kb on + strandat 635.310 kb on + strandat 635.344 kb on + strandat 635.376 kb on + strandat 635.384 kb on - strandat 635.384 kb on - strandat 635.438 kb on - strand, within CSW01_03190at 635.485 kb on + strand, within CSW01_03190at 635.492 kb on - strand, within CSW01_03190at 635.512 kb on + strand, within CSW01_03190at 635.525 kb on + strand, within CSW01_03190at 635.539 kb on - strand, within CSW01_03190at 635.555 kb on - strand, within CSW01_03190at 635.564 kb on + strand, within CSW01_03190at 635.610 kb on + strand, within CSW01_03190at 635.610 kb on + strand, within CSW01_03190at 635.610 kb on + strand, within CSW01_03190at 635.618 kb on - strand, within CSW01_03190at 635.618 kb on - strand, within CSW01_03190at 635.618 kb on - strand, within CSW01_03190at 635.627 kb on + strand, within CSW01_03190at 635.675 kb on - strand, within CSW01_03190at 635.675 kb on - strand, within CSW01_03190at 635.683 kb on + strand, within CSW01_03190at 635.759 kb on + strandat 635.764 kb on + strandat 635.764 kb on + strandat 635.767 kb on - strandat 635.767 kb on - strandat 635.767 kb on - strandat 635.772 kb on - strandat 635.774 kb on + strandat 635.782 kb on - strandat 636.054 kb on + strand, within CSW01_03195at 636.054 kb on - strand, within CSW01_03195at 636.055 kb on - strand, within CSW01_03195at 636.080 kb on - strand, within CSW01_03195at 636.085 kb on - strand, within CSW01_03195at 636.085 kb on - strand, within CSW01_03195at 636.085 kb on - strand, within CSW01_03195at 636.085 kb on - strand, within CSW01_03195at 636.085 kb on - strand, within CSW01_03195at 636.085 kb on - strand, within CSW01_03195at 636.188 kb on + strand, within CSW01_03195at 636.226 kb on + strand, within CSW01_03195at 636.248 kb on - strandat 636.372 kb on - strandat 636.425 kb on - strandat 636.425 kb on - strandat 636.470 kb on + strand, within CSW01_03200at 636.512 kb on - strand, within CSW01_03200at 636.515 kb on + strand, within CSW01_03200at 636.538 kb on - strand, within CSW01_03200at 636.549 kb on + strand, within CSW01_03200at 636.586 kb on + strand, within CSW01_03200at 636.594 kb on - strand, within CSW01_03200at 636.655 kb on + strand, within CSW01_03200at 636.711 kb on + strand, within CSW01_03200at 636.711 kb on + strand, within CSW01_03200at 636.711 kb on + strand, within CSW01_03200at 636.719 kb on - strand, within CSW01_03200at 636.720 kb on + strand, within CSW01_03200at 636.725 kb on + strand, within CSW01_03200at 636.733 kb on + strand, within CSW01_03200at 636.756 kb on - strand, within CSW01_03200at 636.806 kb on - strand, within CSW01_03200at 636.807 kb on - strand, within CSW01_03200at 636.852 kb on - strand, within CSW01_03200at 636.934 kb on - strand, within CSW01_03200at 636.943 kb on - strand, within CSW01_03200at 637.047 kb on - strand, within CSW01_03200at 637.072 kb on - strand, within CSW01_03200at 637.093 kb on - strand, within CSW01_03200at 637.118 kb on - strand, within CSW01_03200at 637.121 kb on + strand, within CSW01_03200at 637.122 kb on + strand, within CSW01_03200at 637.130 kb on - strand, within CSW01_03200at 637.130 kb on - strand, within CSW01_03200at 637.130 kb on - strand, within CSW01_03200at 637.142 kb on - strand, within CSW01_03200at 637.184 kb on + strand, within CSW01_03200at 637.197 kb on - strand, within CSW01_03200at 637.209 kb on + strand, within CSW01_03200at 637.209 kb on + strand, within CSW01_03200at 637.211 kb on + strand, within CSW01_03200at 637.217 kb on - strand, within CSW01_03200at 637.217 kb on - strand, within CSW01_03200at 637.217 kb on - strand, within CSW01_03200at 637.217 kb on - strand, within CSW01_03200at 637.217 kb on - strand, within CSW01_03200at 637.219 kb on + strand, within CSW01_03200at 637.261 kb on - strand, within CSW01_03200

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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635,180 + +0.3
635,297 + -0.3
635,310 + +1.4
635,310 + -1.5
635,344 + +0.6
635,376 + -0.5
635,384 - -0.4
635,384 - -0.1
635,438 - CSW01_03190 0.14 +0.1
635,485 + CSW01_03190 0.26 -1.9
635,492 - CSW01_03190 0.28 +0.0
635,512 + CSW01_03190 0.33 -0.2
635,525 + CSW01_03190 0.37 +0.2
635,539 - CSW01_03190 0.40 +0.5
635,555 - CSW01_03190 0.45 -1.9
635,564 + CSW01_03190 0.47 -0.4
635,610 + CSW01_03190 0.59 +0.6
635,610 + CSW01_03190 0.59 -1.4
635,610 + CSW01_03190 0.59 -0.2
635,618 - CSW01_03190 0.61 +0.1
635,618 - CSW01_03190 0.61 +0.1
635,618 - CSW01_03190 0.61 +1.0
635,627 + CSW01_03190 0.64 +0.3
635,675 - CSW01_03190 0.76 +0.3
635,675 - CSW01_03190 0.76 -1.2
635,683 + CSW01_03190 0.78 +0.2
635,759 + +0.6
635,764 + +0.3
635,764 + -0.5
635,767 - +0.7
635,767 - +0.6
635,767 - +1.0
635,772 - +0.8
635,774 + -0.1
635,782 - -0.0
636,054 + CSW01_03195 0.33 -0.6
636,054 - CSW01_03195 0.33 -2.6
636,055 - CSW01_03195 0.33 +0.5
636,080 - CSW01_03195 0.40 +0.4
636,085 - CSW01_03195 0.42 -0.2
636,085 - CSW01_03195 0.42 -1.0
636,085 - CSW01_03195 0.42 -2.2
636,085 - CSW01_03195 0.42 -2.1
636,085 - CSW01_03195 0.42 -0.6
636,085 - CSW01_03195 0.42 -1.6
636,188 + CSW01_03195 0.72 -0.3
636,226 + CSW01_03195 0.83 +0.8
636,248 - -0.6
636,372 - -0.1
636,425 - +0.4
636,425 - -0.9
636,470 + CSW01_03200 0.14 -0.0
636,512 - CSW01_03200 0.17 -0.1
636,515 + CSW01_03200 0.17 -1.1
636,538 - CSW01_03200 0.19 +1.0
636,549 + CSW01_03200 0.20 +0.2
636,586 + CSW01_03200 0.23 +0.1
636,594 - CSW01_03200 0.24 +1.9
636,655 + CSW01_03200 0.29 +1.0
636,711 + CSW01_03200 0.33 +1.4
636,711 + CSW01_03200 0.33 -0.4
636,711 + CSW01_03200 0.33 -1.6
636,719 - CSW01_03200 0.34 -0.0
636,720 + CSW01_03200 0.34 +0.8
636,725 + CSW01_03200 0.34 -0.3
636,733 + CSW01_03200 0.35 -0.9
636,756 - CSW01_03200 0.37 -0.5
636,806 - CSW01_03200 0.41 +0.7
636,807 - CSW01_03200 0.41 -0.7
636,852 - CSW01_03200 0.45 -0.9
636,934 - CSW01_03200 0.51 +0.2
636,943 - CSW01_03200 0.52 +1.6
637,047 - CSW01_03200 0.60 -0.3
637,072 - CSW01_03200 0.63 +0.5
637,093 - CSW01_03200 0.64 -1.0
637,118 - CSW01_03200 0.66 -0.7
637,121 + CSW01_03200 0.67 +1.8
637,122 + CSW01_03200 0.67 -0.8
637,130 - CSW01_03200 0.67 -1.3
637,130 - CSW01_03200 0.67 -0.5
637,130 - CSW01_03200 0.67 +0.4
637,142 - CSW01_03200 0.68 +0.2
637,184 + CSW01_03200 0.72 +0.1
637,197 - CSW01_03200 0.73 -0.7
637,209 + CSW01_03200 0.74 -0.6
637,209 + CSW01_03200 0.74 +0.4
637,211 + CSW01_03200 0.74 +0.2
637,217 - CSW01_03200 0.74 +1.9
637,217 - CSW01_03200 0.74 +0.3
637,217 - CSW01_03200 0.74 +0.6
637,217 - CSW01_03200 0.74 +0.1
637,217 - CSW01_03200 0.74 +0.6
637,219 + CSW01_03200 0.74 +0.2
637,261 - CSW01_03200 0.78 +0.5

Or see this region's nucleotide sequence