Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02975

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02970 and CSW01_02975 are separated by 48 nucleotidesCSW01_02975 and CSW01_02980 are separated by 69 nucleotides CSW01_02970: CSW01_02970 - glutamate--cysteine ligase, at 588,825 to 590,399 _02970 CSW01_02975: CSW01_02975 - S-ribosylhomocysteine lyase, at 590,448 to 590,966 _02975 CSW01_02980: CSW01_02980 - HlyC/CorC family transporter, at 591,036 to 592,316 _02980 Position (kb) 590 591Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 589.503 kb on + strand, within CSW01_02970at 589.515 kb on - strand, within CSW01_02970at 589.520 kb on + strand, within CSW01_02970at 589.530 kb on - strand, within CSW01_02970at 589.582 kb on + strand, within CSW01_02970at 589.582 kb on + strand, within CSW01_02970at 589.590 kb on - strand, within CSW01_02970at 589.610 kb on - strand, within CSW01_02970at 589.680 kb on + strand, within CSW01_02970at 589.693 kb on - strand, within CSW01_02970at 589.710 kb on + strand, within CSW01_02970at 589.770 kb on + strand, within CSW01_02970at 589.770 kb on + strand, within CSW01_02970at 589.795 kb on + strand, within CSW01_02970at 589.795 kb on + strand, within CSW01_02970at 589.833 kb on - strand, within CSW01_02970at 589.918 kb on + strand, within CSW01_02970at 589.918 kb on + strand, within CSW01_02970at 589.962 kb on - strand, within CSW01_02970at 590.013 kb on + strand, within CSW01_02970at 590.013 kb on + strand, within CSW01_02970at 590.038 kb on + strand, within CSW01_02970at 590.085 kb on + strand, within CSW01_02970at 590.163 kb on + strand, within CSW01_02970at 590.171 kb on - strand, within CSW01_02970at 590.226 kb on + strand, within CSW01_02970at 590.315 kb on - strandat 590.315 kb on - strandat 590.464 kb on + strandat 590.464 kb on + strandat 590.492 kb on - strandat 590.527 kb on + strand, within CSW01_02975at 590.527 kb on + strand, within CSW01_02975at 590.550 kb on - strand, within CSW01_02975at 590.561 kb on + strand, within CSW01_02975at 590.648 kb on + strand, within CSW01_02975at 590.659 kb on + strand, within CSW01_02975at 590.672 kb on - strand, within CSW01_02975at 590.703 kb on + strand, within CSW01_02975at 590.836 kb on - strand, within CSW01_02975at 590.920 kb on + strandat 590.928 kb on - strandat 590.930 kb on + strandat 590.938 kb on - strandat 590.948 kb on - strandat 591.005 kb on - strandat 591.034 kb on + strandat 591.042 kb on - strandat 591.070 kb on + strandat 591.088 kb on - strandat 591.169 kb on - strand, within CSW01_02980at 591.216 kb on - strand, within CSW01_02980at 591.231 kb on + strand, within CSW01_02980at 591.266 kb on - strand, within CSW01_02980at 591.282 kb on + strand, within CSW01_02980at 591.308 kb on + strand, within CSW01_02980at 591.308 kb on + strand, within CSW01_02980at 591.443 kb on + strand, within CSW01_02980at 591.443 kb on + strand, within CSW01_02980at 591.462 kb on + strand, within CSW01_02980at 591.493 kb on + strand, within CSW01_02980at 591.548 kb on - strand, within CSW01_02980at 591.617 kb on - strand, within CSW01_02980at 591.724 kb on - strand, within CSW01_02980at 591.770 kb on - strand, within CSW01_02980at 591.800 kb on - strand, within CSW01_02980at 591.830 kb on + strand, within CSW01_02980at 591.860 kb on + strand, within CSW01_02980at 591.863 kb on - strand, within CSW01_02980at 591.895 kb on + strand, within CSW01_02980at 591.895 kb on + strand, within CSW01_02980at 591.896 kb on - strand, within CSW01_02980at 591.953 kb on - strand, within CSW01_02980at 591.963 kb on - strand, within CSW01_02980

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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589,503 + CSW01_02970 0.43 -1.6
589,515 - CSW01_02970 0.44 +0.7
589,520 + CSW01_02970 0.44 -3.0
589,530 - CSW01_02970 0.45 -1.2
589,582 + CSW01_02970 0.48 +0.2
589,582 + CSW01_02970 0.48 -2.2
589,590 - CSW01_02970 0.49 -0.7
589,610 - CSW01_02970 0.50 -1.6
589,680 + CSW01_02970 0.54 -0.3
589,693 - CSW01_02970 0.55 -3.2
589,710 + CSW01_02970 0.56 -2.6
589,770 + CSW01_02970 0.60 -0.9
589,770 + CSW01_02970 0.60 -0.7
589,795 + CSW01_02970 0.62 -0.9
589,795 + CSW01_02970 0.62 -1.9
589,833 - CSW01_02970 0.64 -2.6
589,918 + CSW01_02970 0.69 -0.6
589,918 + CSW01_02970 0.69 -1.6
589,962 - CSW01_02970 0.72 +1.4
590,013 + CSW01_02970 0.75 -1.2
590,013 + CSW01_02970 0.75 +2.4
590,038 + CSW01_02970 0.77 +0.6
590,085 + CSW01_02970 0.80 -0.7
590,163 + CSW01_02970 0.85 +1.0
590,171 - CSW01_02970 0.85 -1.2
590,226 + CSW01_02970 0.89 -0.4
590,315 - +0.2
590,315 - -2.0
590,464 + +0.1
590,464 + -1.4
590,492 - -0.6
590,527 + CSW01_02975 0.15 +0.0
590,527 + CSW01_02975 0.15 -0.3
590,550 - CSW01_02975 0.20 +0.6
590,561 + CSW01_02975 0.22 +0.1
590,648 + CSW01_02975 0.39 +0.8
590,659 + CSW01_02975 0.41 +1.2
590,672 - CSW01_02975 0.43 +0.0
590,703 + CSW01_02975 0.49 +0.2
590,836 - CSW01_02975 0.75 +0.2
590,920 + +0.3
590,928 - -2.0
590,930 + +2.0
590,938 - +1.2
590,948 - -0.2
591,005 - -0.3
591,034 + -0.2
591,042 - -1.2
591,070 + -0.0
591,088 - -0.4
591,169 - CSW01_02980 0.10 -0.3
591,216 - CSW01_02980 0.14 -0.5
591,231 + CSW01_02980 0.15 +0.9
591,266 - CSW01_02980 0.18 -0.6
591,282 + CSW01_02980 0.19 -0.6
591,308 + CSW01_02980 0.21 +0.1
591,308 + CSW01_02980 0.21 +0.6
591,443 + CSW01_02980 0.32 +1.0
591,443 + CSW01_02980 0.32 -0.4
591,462 + CSW01_02980 0.33 +0.8
591,493 + CSW01_02980 0.36 -0.4
591,548 - CSW01_02980 0.40 -1.0
591,617 - CSW01_02980 0.45 +0.4
591,724 - CSW01_02980 0.54 -0.6
591,770 - CSW01_02980 0.57 -1.9
591,800 - CSW01_02980 0.60 -1.5
591,830 + CSW01_02980 0.62 -3.2
591,860 + CSW01_02980 0.64 -0.9
591,863 - CSW01_02980 0.65 -1.6
591,895 + CSW01_02980 0.67 +0.7
591,895 + CSW01_02980 0.67 -0.2
591,896 - CSW01_02980 0.67 +0.2
591,953 - CSW01_02980 0.72 +0.4
591,963 - CSW01_02980 0.72 +0.0

Or see this region's nucleotide sequence