Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02160 and CSW01_02165 overlap by 53 nucleotides CSW01_02165 and CSW01_02170 overlap by 1 nucleotides CSW01_02170 and CSW01_02175 overlap by 35 nucleotides CSW01_02175 and CSW01_02180 overlap by 8 nucleotides
CSW01_02160: CSW01_02160 - MSHA pilin protein MshC, at 434,763 to 435,251
_02160
CSW01_02165: CSW01_02165 - MSHA pilin protein MshD, at 435,199 to 435,810
_02165
CSW01_02170: CSW01_02170 - type II secretion system protein, at 435,810 to 436,580
_02170
CSW01_02175: CSW01_02175 - MSHA biogenesis protein MshP, at 436,546 to 436,977
_02175
CSW01_02180: CSW01_02180 - MSHA biogenesis protein MshQ, at 436,970 to 440,728
_02180
Position (kb) 435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 434.831 kb on - strand, within CSW01_02160 at 434.861 kb on + strand, within CSW01_02160 at 434.919 kb on + strand, within CSW01_02160 at 434.919 kb on + strand, within CSW01_02160 at 434.919 kb on + strand, within CSW01_02160 at 434.922 kb on - strand, within CSW01_02160 at 434.927 kb on - strand, within CSW01_02160 at 434.927 kb on - strand, within CSW01_02160 at 434.927 kb on - strand, within CSW01_02160 at 434.927 kb on - strand, within CSW01_02160 at 434.927 kb on - strand, within CSW01_02160 at 434.947 kb on - strand, within CSW01_02160 at 435.006 kb on + strand, within CSW01_02160 at 435.014 kb on - strand, within CSW01_02160 at 435.014 kb on - strand, within CSW01_02160 at 435.014 kb on - strand, within CSW01_02160 at 435.019 kb on - strand, within CSW01_02160 at 435.051 kb on - strand, within CSW01_02160 at 435.082 kb on - strand, within CSW01_02160 at 435.132 kb on + strand, within CSW01_02160 at 435.133 kb on + strand, within CSW01_02160 at 435.155 kb on - strand, within CSW01_02160 at 435.165 kb on - strand, within CSW01_02160 at 435.187 kb on + strand, within CSW01_02160 at 435.203 kb on + strand at 435.205 kb on - strand at 435.231 kb on + strand at 435.231 kb on + strand at 435.231 kb on + strand at 435.237 kb on + strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.279 kb on - strand, within CSW01_02165 at 435.314 kb on + strand, within CSW01_02165 at 435.314 kb on + strand, within CSW01_02165 at 435.314 kb on + strand, within CSW01_02165 at 435.314 kb on + strand, within CSW01_02165 at 435.314 kb on + strand, within CSW01_02165 at 435.314 kb on + strand, within CSW01_02165 at 435.322 kb on - strand, within CSW01_02165 at 435.353 kb on + strand, within CSW01_02165 at 435.361 kb on - strand, within CSW01_02165 at 435.361 kb on - strand, within CSW01_02165 at 435.365 kb on + strand, within CSW01_02165 at 435.397 kb on + strand, within CSW01_02165 at 435.397 kb on + strand, within CSW01_02165 at 435.405 kb on - strand, within CSW01_02165 at 435.415 kb on - strand, within CSW01_02165 at 435.415 kb on - strand, within CSW01_02165 at 435.424 kb on + strand, within CSW01_02165 at 435.424 kb on + strand, within CSW01_02165 at 435.460 kb on + strand, within CSW01_02165 at 435.462 kb on - strand, within CSW01_02165 at 435.468 kb on - strand, within CSW01_02165 at 435.500 kb on + strand, within CSW01_02165 at 435.500 kb on + strand, within CSW01_02165 at 435.508 kb on - strand, within CSW01_02165 at 435.508 kb on - strand, within CSW01_02165 at 435.508 kb on - strand, within CSW01_02165 at 435.529 kb on - strand, within CSW01_02165 at 435.593 kb on - strand, within CSW01_02165 at 435.604 kb on - strand, within CSW01_02165 at 435.719 kb on - strand, within CSW01_02165 at 435.732 kb on + strand, within CSW01_02165 at 435.781 kb on - strand at 435.792 kb on + strand at 435.801 kb on - strand at 435.812 kb on - strand at 435.814 kb on + strand at 435.847 kb on + strand at 435.855 kb on - strand at 435.855 kb on - strand at 435.894 kb on + strand, within CSW01_02170 at 435.894 kb on - strand, within CSW01_02170 at 435.976 kb on + strand, within CSW01_02170 at 435.976 kb on + strand, within CSW01_02170 at 435.976 kb on + strand, within CSW01_02170 at 435.976 kb on + strand, within CSW01_02170 at 435.976 kb on + strand, within CSW01_02170 at 435.976 kb on + strand, within CSW01_02170 at 435.976 kb on + strand, within CSW01_02170 at 435.976 kb on + strand, within CSW01_02170 at 435.977 kb on - strand, within CSW01_02170 at 435.984 kb on - strand, within CSW01_02170 at 435.984 kb on - strand, within CSW01_02170 at 435.984 kb on - strand, within CSW01_02170 at 435.984 kb on - strand, within CSW01_02170 at 435.984 kb on - strand, within CSW01_02170 at 435.984 kb on - strand, within CSW01_02170 at 435.984 kb on - strand, within CSW01_02170 at 435.984 kb on - strand, within CSW01_02170 at 435.984 kb on - strand, within CSW01_02170 at 435.986 kb on + strand, within CSW01_02170 at 435.986 kb on + strand, within CSW01_02170 at 435.993 kb on + strand, within CSW01_02170 at 435.994 kb on - strand, within CSW01_02170 at 435.994 kb on - strand, within CSW01_02170 at 435.994 kb on - strand, within CSW01_02170 at 435.994 kb on - strand, within CSW01_02170 at 435.996 kb on + strand, within CSW01_02170 at 436.004 kb on - strand, within CSW01_02170 at 436.006 kb on + strand, within CSW01_02170 at 436.044 kb on + strand, within CSW01_02170 at 436.044 kb on + strand, within CSW01_02170 at 436.044 kb on + strand, within CSW01_02170 at 436.044 kb on + strand, within CSW01_02170 at 436.044 kb on + strand, within CSW01_02170 at 436.044 kb on + strand, within CSW01_02170 at 436.044 kb on + strand, within CSW01_02170 at 436.044 kb on + strand, within CSW01_02170 at 436.052 kb on - strand, within CSW01_02170 at 436.052 kb on - strand, within CSW01_02170 at 436.067 kb on + strand, within CSW01_02170 at 436.093 kb on - strand, within CSW01_02170 at 436.126 kb on + strand, within CSW01_02170 at 436.167 kb on + strand, within CSW01_02170 at 436.167 kb on + strand, within CSW01_02170 at 436.175 kb on - strand, within CSW01_02170 at 436.175 kb on - strand, within CSW01_02170 at 436.182 kb on + strand, within CSW01_02170 at 436.227 kb on - strand, within CSW01_02170 at 436.239 kb on + strand, within CSW01_02170 at 436.242 kb on - strand, within CSW01_02170 at 436.280 kb on - strand, within CSW01_02170 at 436.280 kb on - strand, within CSW01_02170 at 436.280 kb on - strand, within CSW01_02170 at 436.290 kb on + strand, within CSW01_02170 at 436.291 kb on + strand, within CSW01_02170 at 436.337 kb on + strand, within CSW01_02170 at 436.350 kb on - strand, within CSW01_02170 at 436.352 kb on + strand, within CSW01_02170 at 436.372 kb on + strand, within CSW01_02170 at 436.446 kb on - strand, within CSW01_02170 at 436.467 kb on + strand, within CSW01_02170 at 436.548 kb on + strand at 436.582 kb on + strand at 436.587 kb on + strand at 436.602 kb on - strand, within CSW01_02175 at 436.602 kb on - strand, within CSW01_02175 at 436.681 kb on - strand, within CSW01_02175 at 436.695 kb on + strand, within CSW01_02175 at 436.796 kb on - strand, within CSW01_02175 at 436.819 kb on + strand, within CSW01_02175 at 436.821 kb on + strand, within CSW01_02175 at 436.825 kb on + strand, within CSW01_02175 at 436.825 kb on + strand, within CSW01_02175 at 436.826 kb on + strand, within CSW01_02175 at 436.826 kb on + strand, within CSW01_02175 at 436.826 kb on + strand, within CSW01_02175 at 436.826 kb on + strand, within CSW01_02175 at 436.826 kb on + strand, within CSW01_02175 at 436.858 kb on - strand, within CSW01_02175 at 436.899 kb on + strand, within CSW01_02175 at 436.900 kb on - strand, within CSW01_02175 at 436.904 kb on + strand, within CSW01_02175 at 436.904 kb on + strand, within CSW01_02175 at 436.904 kb on + strand, within CSW01_02175 at 436.904 kb on + strand, within CSW01_02175 at 436.904 kb on + strand, within CSW01_02175 at 436.904 kb on + strand, within CSW01_02175 at 436.912 kb on - strand, within CSW01_02175 at 436.912 kb on - strand, within CSW01_02175 at 436.912 kb on - strand, within CSW01_02175 at 436.912 kb on - strand, within CSW01_02175 at 436.912 kb on - strand, within CSW01_02175 at 436.912 kb on - strand, within CSW01_02175 at 436.930 kb on + strand, within CSW01_02175 at 436.993 kb on - strand at 437.010 kb on + strand at 437.010 kb on + strand at 437.010 kb on + strand at 437.015 kb on + strand at 437.015 kb on + strand at 437.020 kb on + strand at 437.020 kb on + strand at 437.020 kb on + strand at 437.025 kb on + strand at 437.028 kb on - strand at 437.028 kb on - strand at 437.076 kb on + strand at 437.076 kb on + strand at 437.076 kb on + strand at 437.076 kb on + strand at 437.081 kb on + strand at 437.081 kb on + strand at 437.081 kb on + strand at 437.081 kb on + strand at 437.084 kb on - strand at 437.084 kb on - strand at 437.089 kb on - strand at 437.089 kb on - strand at 437.089 kb on - strand at 437.089 kb on - strand at 437.089 kb on - strand at 437.089 kb on - strand at 437.100 kb on + strand at 437.129 kb on + strand at 437.129 kb on + strand at 437.131 kb on + strand at 437.131 kb on + strand at 437.158 kb on + strand at 437.206 kb on + strand at 437.206 kb on + strand at 437.206 kb on + strand at 437.206 kb on + strand at 437.206 kb on + strand at 437.206 kb on + strand at 437.214 kb on - strand at 437.214 kb on - strand at 437.214 kb on - strand at 437.214 kb on - strand at 437.214 kb on - strand at 437.214 kb on - strand at 437.231 kb on - strand at 437.262 kb on + strand at 437.262 kb on + strand at 437.263 kb on + strand at 437.270 kb on - strand at 437.276 kb on - strand at 437.285 kb on - strand at 437.295 kb on + strand at 437.303 kb on - strand at 437.326 kb on + strand at 437.326 kb on + strand at 437.326 kb on + strand at 437.326 kb on + strand at 437.326 kb on + strand at 437.326 kb on + strand at 437.326 kb on + strand at 437.326 kb on + strand at 437.334 kb on - strand at 437.334 kb on - strand at 437.334 kb on - strand at 437.334 kb on - strand at 437.334 kb on - strand at 437.334 kb on - strand at 437.336 kb on + strand at 437.343 kb on + strand at 437.375 kb on + strand, within CSW01_02180 at 437.380 kb on + strand, within CSW01_02180 at 437.383 kb on - strand, within CSW01_02180 at 437.388 kb on - strand, within CSW01_02180 at 437.468 kb on - strand, within CSW01_02180 at 437.470 kb on + strand, within CSW01_02180 at 437.490 kb on - strand, within CSW01_02180 at 437.516 kb on + strand, within CSW01_02180 at 437.530 kb on + strand, within CSW01_02180 at 437.537 kb on + strand, within CSW01_02180 at 437.545 kb on - strand, within CSW01_02180 at 437.567 kb on + strand, within CSW01_02180 at 437.575 kb on - strand, within CSW01_02180
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A remove 434,831 - CSW01_02160 0.14 +1.0 434,861 + CSW01_02160 0.20 +1.5 434,919 + CSW01_02160 0.32 -0.8 434,919 + CSW01_02160 0.32 +0.2 434,919 + CSW01_02160 0.32 +1.8 434,922 - CSW01_02160 0.33 +0.1 434,927 - CSW01_02160 0.34 +1.9 434,927 - CSW01_02160 0.34 +0.8 434,927 - CSW01_02160 0.34 +0.6 434,927 - CSW01_02160 0.34 +0.5 434,927 - CSW01_02160 0.34 +0.9 434,947 - CSW01_02160 0.38 +0.4 435,006 + CSW01_02160 0.50 +1.1 435,014 - CSW01_02160 0.51 +0.3 435,014 - CSW01_02160 0.51 +0.4 435,014 - CSW01_02160 0.51 +0.3 435,019 - CSW01_02160 0.52 +0.3 435,051 - CSW01_02160 0.59 -0.3 435,082 - CSW01_02160 0.65 +1.5 435,132 + CSW01_02160 0.75 -0.2 435,133 + CSW01_02160 0.76 -1.0 435,155 - CSW01_02160 0.80 +1.4 435,165 - CSW01_02160 0.82 -0.5 435,187 + CSW01_02160 0.87 +0.2 435,203 + +1.2 435,205 - +0.8 435,231 + +0.5 435,231 + +0.9 435,231 + -0.1 435,237 + -0.8 435,239 - -1.0 435,239 - +0.8 435,239 - +0.5 435,239 - +0.4 435,239 - -0.5 435,239 - +0.4 435,279 - CSW01_02165 0.13 -0.2 435,314 + CSW01_02165 0.19 -0.0 435,314 + CSW01_02165 0.19 -1.2 435,314 + CSW01_02165 0.19 +0.0 435,314 + CSW01_02165 0.19 +0.8 435,314 + CSW01_02165 0.19 +0.7 435,314 + CSW01_02165 0.19 -0.0 435,322 - CSW01_02165 0.20 +0.4 435,353 + CSW01_02165 0.25 +0.0 435,361 - CSW01_02165 0.26 -0.3 435,361 - CSW01_02165 0.26 +0.0 435,365 + CSW01_02165 0.27 +0.2 435,397 + CSW01_02165 0.32 +0.2 435,397 + CSW01_02165 0.32 -0.5 435,405 - CSW01_02165 0.34 -0.2 435,415 - CSW01_02165 0.35 +0.2 435,415 - CSW01_02165 0.35 +1.5 435,424 + CSW01_02165 0.37 +0.4 435,424 + CSW01_02165 0.37 +0.3 435,460 + CSW01_02165 0.43 +0.1 435,462 - CSW01_02165 0.43 +3.2 435,468 - CSW01_02165 0.44 +0.5 435,500 + CSW01_02165 0.49 -2.1 435,500 + CSW01_02165 0.49 +1.5 435,508 - CSW01_02165 0.50 +0.4 435,508 - CSW01_02165 0.50 -0.6 435,508 - CSW01_02165 0.50 +0.3 435,529 - CSW01_02165 0.54 -0.2 435,593 - CSW01_02165 0.64 +0.6 435,604 - CSW01_02165 0.66 +0.6 435,719 - CSW01_02165 0.85 +0.7 435,732 + CSW01_02165 0.87 +0.2 435,781 - -0.6 435,792 + +0.6 435,801 - -0.0 435,812 - -0.6 435,814 + +1.1 435,847 + -0.1 435,855 - +0.5 435,855 - +1.1 435,894 + CSW01_02170 0.11 -0.2 435,894 - CSW01_02170 0.11 +0.4 435,976 + CSW01_02170 0.22 +1.0 435,976 + CSW01_02170 0.22 +0.9 435,976 + CSW01_02170 0.22 +0.5 435,976 + CSW01_02170 0.22 +0.4 435,976 + CSW01_02170 0.22 +1.2 435,976 + CSW01_02170 0.22 -0.5 435,976 + CSW01_02170 0.22 -0.0 435,976 + CSW01_02170 0.22 +0.5 435,977 - CSW01_02170 0.22 +0.3 435,984 - CSW01_02170 0.23 +1.0 435,984 - CSW01_02170 0.23 +0.9 435,984 - CSW01_02170 0.23 +1.7 435,984 - CSW01_02170 0.23 +0.7 435,984 - CSW01_02170 0.23 -0.4 435,984 - CSW01_02170 0.23 +0.0 435,984 - CSW01_02170 0.23 +0.8 435,984 - CSW01_02170 0.23 -0.5 435,984 - CSW01_02170 0.23 +1.2 435,986 + CSW01_02170 0.23 -0.7 435,986 + CSW01_02170 0.23 +0.9 435,993 + CSW01_02170 0.24 +1.4 435,994 - CSW01_02170 0.24 +0.4 435,994 - CSW01_02170 0.24 -0.6 435,994 - CSW01_02170 0.24 +1.1 435,994 - CSW01_02170 0.24 +0.3 435,996 + CSW01_02170 0.24 +0.7 436,004 - CSW01_02170 0.25 +0.7 436,006 + CSW01_02170 0.25 +0.4 436,044 + CSW01_02170 0.30 -0.1 436,044 + CSW01_02170 0.30 +0.1 436,044 + CSW01_02170 0.30 +0.4 436,044 + CSW01_02170 0.30 +0.1 436,044 + CSW01_02170 0.30 +0.1 436,044 + CSW01_02170 0.30 +0.1 436,044 + CSW01_02170 0.30 +0.5 436,044 + CSW01_02170 0.30 +0.4 436,052 - CSW01_02170 0.31 -0.1 436,052 - CSW01_02170 0.31 +0.4 436,067 + CSW01_02170 0.33 -0.4 436,093 - CSW01_02170 0.37 +0.5 436,126 + CSW01_02170 0.41 +0.0 436,167 + CSW01_02170 0.46 -0.2 436,167 + CSW01_02170 0.46 +0.2 436,175 - CSW01_02170 0.47 +0.5 436,175 - CSW01_02170 0.47 +0.8 436,182 + CSW01_02170 0.48 +0.5 436,227 - CSW01_02170 0.54 +0.5 436,239 + CSW01_02170 0.56 +0.0 436,242 - CSW01_02170 0.56 +0.6 436,280 - CSW01_02170 0.61 +0.7 436,280 - CSW01_02170 0.61 +0.9 436,280 - CSW01_02170 0.61 +0.2 436,290 + CSW01_02170 0.62 +0.9 436,291 + CSW01_02170 0.62 +0.5 436,337 + CSW01_02170 0.68 +0.1 436,350 - CSW01_02170 0.70 +0.9 436,352 + CSW01_02170 0.70 +1.9 436,372 + CSW01_02170 0.73 +1.0 436,446 - CSW01_02170 0.82 +0.4 436,467 + CSW01_02170 0.85 +1.2 436,548 + +0.5 436,582 + +0.7 436,587 + +0.4 436,602 - CSW01_02175 0.13 -0.5 436,602 - CSW01_02175 0.13 -0.9 436,681 - CSW01_02175 0.31 +1.1 436,695 + CSW01_02175 0.34 -0.4 436,796 - CSW01_02175 0.58 +2.5 436,819 + CSW01_02175 0.63 +0.5 436,821 + CSW01_02175 0.64 +0.6 436,825 + CSW01_02175 0.65 -0.4 436,825 + CSW01_02175 0.65 +0.5 436,826 + CSW01_02175 0.65 +0.5 436,826 + CSW01_02175 0.65 +0.3 436,826 + CSW01_02175 0.65 +0.4 436,826 + CSW01_02175 0.65 +0.3 436,826 + CSW01_02175 0.65 +0.4 436,858 - CSW01_02175 0.72 +0.4 436,899 + CSW01_02175 0.82 -0.9 436,900 - CSW01_02175 0.82 -0.2 436,904 + CSW01_02175 0.83 +0.6 436,904 + CSW01_02175 0.83 -0.1 436,904 + CSW01_02175 0.83 +0.0 436,904 + CSW01_02175 0.83 +1.1 436,904 + CSW01_02175 0.83 +0.7 436,904 + CSW01_02175 0.83 -1.8 436,912 - CSW01_02175 0.85 -0.9 436,912 - CSW01_02175 0.85 +0.5 436,912 - CSW01_02175 0.85 +1.6 436,912 - CSW01_02175 0.85 -2.6 436,912 - CSW01_02175 0.85 +0.7 436,912 - CSW01_02175 0.85 +0.4 436,930 + CSW01_02175 0.89 -0.4 436,993 - +0.7 437,010 + +0.8 437,010 + +0.3 437,010 + +0.4 437,015 + +0.6 437,015 + +0.9 437,020 + +1.8 437,020 + -1.1 437,020 + +0.3 437,025 + -1.3 437,028 - +0.0 437,028 - -2.0 437,076 + -0.4 437,076 + +0.9 437,076 + +0.6 437,076 + +0.7 437,081 + +0.4 437,081 + +0.1 437,081 + +0.6 437,081 + +2.0 437,084 - -0.4 437,084 - +0.6 437,089 - +0.3 437,089 - +0.3 437,089 - -0.1 437,089 - -0.3 437,089 - +1.0 437,089 - +0.2 437,100 + +0.6 437,129 + +0.3 437,129 + +0.6 437,131 + +0.5 437,131 + +0.1 437,158 + +1.0 437,206 + +0.6 437,206 + +0.3 437,206 + +0.9 437,206 + +0.9 437,206 + -0.3 437,206 + -0.5 437,214 - +0.4 437,214 - +0.6 437,214 - +0.6 437,214 - +0.8 437,214 - +0.6 437,214 - +0.9 437,231 - +0.8 437,262 + +0.1 437,262 + +0.3 437,263 + +0.3 437,270 - +0.7 437,276 - -0.2 437,285 - +0.7 437,295 + +0.9 437,303 - +0.9 437,326 + +0.6 437,326 + +0.2 437,326 + +0.8 437,326 + +0.8 437,326 + +0.2 437,326 + +1.0 437,326 + -0.2 437,326 + -0.9 437,334 - -0.1 437,334 - +0.1 437,334 - +0.1 437,334 - -0.9 437,334 - -3.1 437,334 - +0.2 437,336 + +0.8 437,343 + +0.8 437,375 + CSW01_02180 0.11 +1.6 437,380 + CSW01_02180 0.11 +0.4 437,383 - CSW01_02180 0.11 -0.1 437,388 - CSW01_02180 0.11 -1.1 437,468 - CSW01_02180 0.13 +1.1 437,470 + CSW01_02180 0.13 +0.7 437,490 - CSW01_02180 0.14 +0.5 437,516 + CSW01_02180 0.15 +1.1 437,530 + CSW01_02180 0.15 +0.6 437,537 + CSW01_02180 0.15 +0.2 437,545 - CSW01_02180 0.15 +0.1 437,567 + CSW01_02180 0.16 +0.3 437,575 - CSW01_02180 0.16 -0.6
Or see this region's nucleotide sequence