Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02115

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02105 and CSW01_02110 overlap by 4 nucleotidesCSW01_02110 and CSW01_02115 overlap by 8 nucleotidesCSW01_02115 and CSW01_02120 are separated by 14 nucleotides CSW01_02105: CSW01_02105 - MSHA biogenesis protein MshI, at 424,037 to 425,476 _02105 CSW01_02110: CSW01_02110 - MSHA biogenesis protein MshJ, at 425,473 to 426,123 _02110 CSW01_02115: CSW01_02115 - MSHA biogenesis protein MshK, at 426,116 to 426,433 _02115 CSW01_02120: CSW01_02120 - pilus (MSHA type) biogenesis protein MshL, at 426,448 to 428,127 _02120 Position (kb) 426 427Strain fitness (log2 ratio) -2 -1 0 1 2 3at 425.181 kb on + strand, within CSW01_02105at 425.190 kb on + strand, within CSW01_02105at 425.198 kb on - strand, within CSW01_02105at 425.198 kb on - strand, within CSW01_02105at 425.283 kb on + strand, within CSW01_02105at 425.283 kb on + strand, within CSW01_02105at 425.289 kb on - strand, within CSW01_02105at 425.429 kb on + strandat 425.439 kb on + strandat 425.439 kb on + strandat 425.446 kb on + strandat 425.447 kb on - strandat 425.447 kb on - strandat 425.447 kb on - strandat 425.447 kb on - strandat 425.547 kb on + strand, within CSW01_02110at 425.547 kb on + strand, within CSW01_02110at 425.555 kb on - strand, within CSW01_02110at 425.555 kb on - strand, within CSW01_02110at 425.555 kb on - strand, within CSW01_02110at 425.574 kb on - strand, within CSW01_02110at 425.585 kb on + strand, within CSW01_02110at 425.597 kb on - strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.723 kb on + strand, within CSW01_02110at 425.811 kb on - strand, within CSW01_02110at 425.875 kb on - strand, within CSW01_02110at 425.953 kb on + strand, within CSW01_02110at 425.989 kb on + strand, within CSW01_02110at 426.004 kb on - strand, within CSW01_02110at 426.063 kb on + strandat 426.071 kb on - strandat 426.081 kb on + strandat 426.082 kb on + strandat 426.096 kb on - strandat 426.098 kb on + strandat 426.098 kb on + strandat 426.098 kb on + strandat 426.128 kb on + strandat 426.131 kb on - strandat 426.155 kb on + strand, within CSW01_02115at 426.184 kb on - strand, within CSW01_02115at 426.188 kb on + strand, within CSW01_02115at 426.188 kb on + strand, within CSW01_02115at 426.206 kb on - strand, within CSW01_02115at 426.251 kb on + strand, within CSW01_02115at 426.258 kb on + strand, within CSW01_02115at 426.261 kb on - strand, within CSW01_02115at 426.293 kb on - strand, within CSW01_02115at 426.293 kb on - strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.319 kb on + strand, within CSW01_02115at 426.321 kb on + strand, within CSW01_02115at 426.322 kb on - strand, within CSW01_02115at 426.386 kb on + strand, within CSW01_02115at 426.386 kb on + strand, within CSW01_02115at 426.394 kb on - strand, within CSW01_02115at 426.394 kb on - strand, within CSW01_02115at 426.420 kb on + strandat 426.428 kb on - strandat 426.428 kb on - strandat 426.428 kb on - strandat 426.467 kb on + strandat 426.515 kb on - strandat 426.532 kb on + strandat 426.639 kb on + strand, within CSW01_02120at 426.693 kb on - strand, within CSW01_02120at 426.711 kb on + strand, within CSW01_02120at 426.718 kb on + strand, within CSW01_02120at 426.718 kb on + strand, within CSW01_02120at 426.718 kb on + strand, within CSW01_02120at 426.763 kb on + strand, within CSW01_02120at 426.779 kb on + strand, within CSW01_02120at 426.779 kb on + strand, within CSW01_02120at 426.779 kb on + strand, within CSW01_02120at 426.787 kb on - strand, within CSW01_02120at 426.796 kb on + strand, within CSW01_02120at 426.804 kb on - strand, within CSW01_02120at 426.824 kb on + strand, within CSW01_02120at 426.824 kb on + strand, within CSW01_02120at 426.824 kb on + strand, within CSW01_02120at 426.832 kb on - strand, within CSW01_02120at 426.832 kb on - strand, within CSW01_02120at 426.832 kb on - strand, within CSW01_02120at 426.929 kb on + strand, within CSW01_02120at 426.930 kb on - strand, within CSW01_02120at 427.036 kb on + strand, within CSW01_02120at 427.162 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.196 kb on + strand, within CSW01_02120at 427.196 kb on + strand, within CSW01_02120at 427.196 kb on + strand, within CSW01_02120at 427.203 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.318 kb on - strand, within CSW01_02120at 427.322 kb on + strand, within CSW01_02120at 427.344 kb on + strand, within CSW01_02120at 427.344 kb on + strand, within CSW01_02120at 427.345 kb on + strand, within CSW01_02120at 427.358 kb on + strand, within CSW01_02120at 427.392 kb on - strand, within CSW01_02120at 427.393 kb on - strand, within CSW01_02120at 427.399 kb on + strand, within CSW01_02120at 427.427 kb on + strand, within CSW01_02120

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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425,181 + CSW01_02105 0.79 -0.3
425,190 + CSW01_02105 0.80 +1.0
425,198 - CSW01_02105 0.81 +0.3
425,198 - CSW01_02105 0.81 -0.5
425,283 + CSW01_02105 0.87 +1.1
425,283 + CSW01_02105 0.87 +0.3
425,289 - CSW01_02105 0.87 +0.1
425,429 + +0.3
425,439 + +0.6
425,439 + +0.0
425,446 + +1.2
425,447 - -0.0
425,447 - +0.4
425,447 - +0.2
425,447 - +0.4
425,547 + CSW01_02110 0.11 +0.1
425,547 + CSW01_02110 0.11 +0.4
425,555 - CSW01_02110 0.13 +2.1
425,555 - CSW01_02110 0.13 +0.7
425,555 - CSW01_02110 0.13 +0.9
425,574 - CSW01_02110 0.16 +2.7
425,585 + CSW01_02110 0.17 +0.5
425,597 - CSW01_02110 0.19 -0.2
425,600 + CSW01_02110 0.20 +0.0
425,600 + CSW01_02110 0.20 +1.4
425,600 + CSW01_02110 0.20 +0.5
425,600 + CSW01_02110 0.20 +1.1
425,600 + CSW01_02110 0.20 +0.2
425,600 + CSW01_02110 0.20 +0.8
425,600 + CSW01_02110 0.20 +1.2
425,600 + CSW01_02110 0.20 +0.2
425,600 + CSW01_02110 0.20 +0.6
425,608 - CSW01_02110 0.21 -0.2
425,608 - CSW01_02110 0.21 +0.7
425,608 - CSW01_02110 0.21 +0.2
425,608 - CSW01_02110 0.21 -0.1
425,608 - CSW01_02110 0.21 +1.0
425,723 + CSW01_02110 0.38 +0.4
425,811 - CSW01_02110 0.52 +0.1
425,875 - CSW01_02110 0.62 -1.7
425,953 + CSW01_02110 0.74 +0.9
425,989 + CSW01_02110 0.79 -0.3
426,004 - CSW01_02110 0.82 +0.1
426,063 + +0.3
426,071 - -1.4
426,081 + +0.5
426,082 + +0.0
426,096 - +0.1
426,098 + +0.5
426,098 + +1.3
426,098 + +0.5
426,128 + +0.7
426,131 - +0.2
426,155 + CSW01_02115 0.12 +0.8
426,184 - CSW01_02115 0.21 +0.5
426,188 + CSW01_02115 0.23 +1.3
426,188 + CSW01_02115 0.23 +0.8
426,206 - CSW01_02115 0.28 +0.1
426,251 + CSW01_02115 0.42 -0.2
426,258 + CSW01_02115 0.45 +1.3
426,261 - CSW01_02115 0.46 -0.0
426,293 - CSW01_02115 0.56 +1.4
426,293 - CSW01_02115 0.56 +0.6
426,314 + CSW01_02115 0.62 +0.9
426,314 + CSW01_02115 0.62 -0.4
426,314 + CSW01_02115 0.62 +0.3
426,314 + CSW01_02115 0.62 +0.6
426,319 + CSW01_02115 0.64 +0.5
426,321 + CSW01_02115 0.64 +0.8
426,322 - CSW01_02115 0.65 -0.2
426,386 + CSW01_02115 0.85 +0.3
426,386 + CSW01_02115 0.85 +1.1
426,394 - CSW01_02115 0.87 -1.4
426,394 - CSW01_02115 0.87 +0.3
426,420 + +0.2
426,428 - +2.2
426,428 - +0.7
426,428 - +0.5
426,467 + +0.9
426,515 - -0.1
426,532 + +0.1
426,639 + CSW01_02120 0.11 +0.1
426,693 - CSW01_02120 0.15 -0.1
426,711 + CSW01_02120 0.16 +0.3
426,718 + CSW01_02120 0.16 -0.6
426,718 + CSW01_02120 0.16 +0.2
426,718 + CSW01_02120 0.16 -0.2
426,763 + CSW01_02120 0.19 +0.7
426,779 + CSW01_02120 0.20 +0.9
426,779 + CSW01_02120 0.20 +0.9
426,779 + CSW01_02120 0.20 +0.2
426,787 - CSW01_02120 0.20 +1.0
426,796 + CSW01_02120 0.21 +0.2
426,804 - CSW01_02120 0.21 +0.7
426,824 + CSW01_02120 0.22 +1.1
426,824 + CSW01_02120 0.22 -1.1
426,824 + CSW01_02120 0.22 +1.3
426,832 - CSW01_02120 0.23 +3.1
426,832 - CSW01_02120 0.23 +1.9
426,832 - CSW01_02120 0.23 -0.1
426,929 + CSW01_02120 0.29 +0.1
426,930 - CSW01_02120 0.29 +0.6
427,036 + CSW01_02120 0.35 +1.4
427,162 + CSW01_02120 0.42 +0.5
427,195 + CSW01_02120 0.44 +1.0
427,195 + CSW01_02120 0.44 +1.5
427,195 + CSW01_02120 0.44 +0.4
427,195 + CSW01_02120 0.44 +0.4
427,195 + CSW01_02120 0.44 +0.8
427,195 + CSW01_02120 0.44 +0.4
427,195 + CSW01_02120 0.44 -0.0
427,196 + CSW01_02120 0.45 +0.4
427,196 + CSW01_02120 0.45 +0.8
427,196 + CSW01_02120 0.45 +0.8
427,203 - CSW01_02120 0.45 +0.6
427,204 - CSW01_02120 0.45 +1.3
427,204 - CSW01_02120 0.45 -0.3
427,204 - CSW01_02120 0.45 +1.2
427,204 - CSW01_02120 0.45 +0.1
427,204 - CSW01_02120 0.45 -0.1
427,318 - CSW01_02120 0.52 -0.2
427,322 + CSW01_02120 0.52 -0.1
427,344 + CSW01_02120 0.53 -2.0
427,344 + CSW01_02120 0.53 +0.9
427,345 + CSW01_02120 0.53 +0.1
427,358 + CSW01_02120 0.54 +1.2
427,392 - CSW01_02120 0.56 +0.3
427,393 - CSW01_02120 0.56 +0.4
427,399 + CSW01_02120 0.57 +0.3
427,427 + CSW01_02120 0.58 -1.3

Or see this region's nucleotide sequence