Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01355

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01350 and CSW01_01355 are separated by 152 nucleotidesCSW01_01355 and CSW01_01360 are separated by 7 nucleotidesCSW01_01360 and CSW01_01365 are separated by 142 nucleotides CSW01_01350: CSW01_01350 - polysaccharide biosynthesis protein, at 264,114 to 265,979 _01350 CSW01_01355: CSW01_01355 - UDP-glucose 4-epimerase, at 266,132 to 267,103 _01355 CSW01_01360: CSW01_01360 - sugar transferase, at 267,111 to 267,665 _01360 CSW01_01365: CSW01_01365 - MBL fold hydrolase, at 267,808 to 269,175 _01365 Position (kb) 266 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 265.160 kb on + strand, within CSW01_01350at 265.168 kb on - strand, within CSW01_01350at 265.168 kb on - strand, within CSW01_01350at 265.175 kb on + strand, within CSW01_01350at 265.259 kb on - strand, within CSW01_01350at 265.278 kb on - strand, within CSW01_01350at 265.278 kb on - strand, within CSW01_01350at 265.473 kb on + strand, within CSW01_01350at 265.473 kb on + strand, within CSW01_01350at 265.483 kb on + strand, within CSW01_01350at 265.491 kb on - strand, within CSW01_01350at 265.500 kb on + strand, within CSW01_01350at 265.500 kb on + strand, within CSW01_01350at 265.500 kb on + strand, within CSW01_01350at 265.508 kb on - strand, within CSW01_01350at 265.508 kb on - strand, within CSW01_01350at 265.508 kb on - strand, within CSW01_01350at 265.508 kb on - strand, within CSW01_01350at 265.508 kb on - strand, within CSW01_01350at 265.601 kb on + strand, within CSW01_01350at 265.611 kb on - strand, within CSW01_01350at 265.613 kb on + strand, within CSW01_01350at 265.652 kb on + strand, within CSW01_01350at 265.652 kb on + strand, within CSW01_01350at 265.660 kb on - strand, within CSW01_01350at 265.682 kb on + strand, within CSW01_01350at 265.682 kb on + strand, within CSW01_01350at 265.690 kb on - strand, within CSW01_01350at 265.690 kb on - strand, within CSW01_01350at 265.690 kb on - strand, within CSW01_01350at 265.690 kb on - strand, within CSW01_01350at 265.690 kb on - strand, within CSW01_01350at 265.719 kb on + strand, within CSW01_01350at 265.723 kb on - strand, within CSW01_01350at 265.739 kb on + strand, within CSW01_01350at 265.739 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.749 kb on + strand, within CSW01_01350at 265.752 kb on - strand, within CSW01_01350at 265.757 kb on - strand, within CSW01_01350at 265.757 kb on - strand, within CSW01_01350at 265.757 kb on - strand, within CSW01_01350at 265.757 kb on - strand, within CSW01_01350at 265.757 kb on - strand, within CSW01_01350at 265.757 kb on - strand, within CSW01_01350at 265.764 kb on + strand, within CSW01_01350at 265.764 kb on + strand, within CSW01_01350at 265.767 kb on - strand, within CSW01_01350at 265.767 kb on - strand, within CSW01_01350at 265.778 kb on + strand, within CSW01_01350at 265.783 kb on + strand, within CSW01_01350at 265.783 kb on + strand, within CSW01_01350at 265.791 kb on - strand, within CSW01_01350at 265.796 kb on - strandat 265.799 kb on + strandat 265.799 kb on + strandat 265.801 kb on - strandat 265.982 kb on - strandat 266.068 kb on + strandat 266.073 kb on + strandat 266.081 kb on - strandat 266.081 kb on - strandat 266.081 kb on - strandat 266.093 kb on - strandat 266.125 kb on + strandat 266.139 kb on - strandat 266.209 kb on - strandat 266.226 kb on + strandat 266.228 kb on - strandat 266.234 kb on - strand, within CSW01_01355at 266.268 kb on + strand, within CSW01_01355at 266.286 kb on - strand, within CSW01_01355at 266.306 kb on + strand, within CSW01_01355at 266.314 kb on - strand, within CSW01_01355at 266.318 kb on + strand, within CSW01_01355at 266.319 kb on - strand, within CSW01_01355at 266.345 kb on - strand, within CSW01_01355at 266.366 kb on - strand, within CSW01_01355at 266.391 kb on + strand, within CSW01_01355at 266.407 kb on - strand, within CSW01_01355at 266.417 kb on + strand, within CSW01_01355at 266.460 kb on - strand, within CSW01_01355at 266.509 kb on + strand, within CSW01_01355at 266.509 kb on + strand, within CSW01_01355at 266.509 kb on + strand, within CSW01_01355at 266.517 kb on - strand, within CSW01_01355at 266.548 kb on + strand, within CSW01_01355at 266.553 kb on + strand, within CSW01_01355at 266.553 kb on + strand, within CSW01_01355at 266.561 kb on - strand, within CSW01_01355at 266.577 kb on + strand, within CSW01_01355at 266.588 kb on + strand, within CSW01_01355at 266.648 kb on + strand, within CSW01_01355at 266.648 kb on + strand, within CSW01_01355at 266.656 kb on - strand, within CSW01_01355at 266.657 kb on - strand, within CSW01_01355at 266.661 kb on + strand, within CSW01_01355at 266.668 kb on + strand, within CSW01_01355at 266.668 kb on + strand, within CSW01_01355at 266.676 kb on - strand, within CSW01_01355at 266.676 kb on - strand, within CSW01_01355at 266.676 kb on - strand, within CSW01_01355at 266.676 kb on - strand, within CSW01_01355at 266.686 kb on - strand, within CSW01_01355at 266.717 kb on + strand, within CSW01_01355at 266.751 kb on - strand, within CSW01_01355at 266.763 kb on - strand, within CSW01_01355at 266.803 kb on + strand, within CSW01_01355at 266.803 kb on + strand, within CSW01_01355at 266.811 kb on - strand, within CSW01_01355at 266.866 kb on + strand, within CSW01_01355at 266.874 kb on - strand, within CSW01_01355at 266.883 kb on + strand, within CSW01_01355at 266.935 kb on - strand, within CSW01_01355at 266.937 kb on + strand, within CSW01_01355at 266.940 kb on - strand, within CSW01_01355at 266.959 kb on + strand, within CSW01_01355at 266.966 kb on - strand, within CSW01_01355at 266.966 kb on - strand, within CSW01_01355at 266.966 kb on - strand, within CSW01_01355at 266.977 kb on + strand, within CSW01_01355at 266.977 kb on + strand, within CSW01_01355at 267.020 kb on + strandat 267.063 kb on - strandat 267.150 kb on + strandat 267.150 kb on + strandat 267.158 kb on - strandat 267.161 kb on + strandat 267.169 kb on - strand, within CSW01_01360at 267.169 kb on - strand, within CSW01_01360at 267.171 kb on + strand, within CSW01_01360at 267.173 kb on + strand, within CSW01_01360at 267.179 kb on - strand, within CSW01_01360at 267.256 kb on + strand, within CSW01_01360at 267.256 kb on + strand, within CSW01_01360at 267.256 kb on + strand, within CSW01_01360at 267.264 kb on - strand, within CSW01_01360at 267.264 kb on - strand, within CSW01_01360at 267.305 kb on - strand, within CSW01_01360at 267.384 kb on + strand, within CSW01_01360at 267.415 kb on + strand, within CSW01_01360at 267.421 kb on - strand, within CSW01_01360at 267.423 kb on - strand, within CSW01_01360at 267.537 kb on - strand, within CSW01_01360at 267.612 kb on - strandat 267.627 kb on + strandat 267.653 kb on + strandat 267.687 kb on - strandat 267.689 kb on + strandat 267.705 kb on - strandat 267.721 kb on + strandat 267.738 kb on + strandat 267.813 kb on + strandat 267.815 kb on + strandat 267.828 kb on + strandat 267.836 kb on - strandat 267.836 kb on - strandat 267.836 kb on - strandat 267.878 kb on + strandat 267.880 kb on + strandat 267.886 kb on - strandat 267.906 kb on - strandat 267.970 kb on - strand, within CSW01_01365at 267.975 kb on + strand, within CSW01_01365at 267.975 kb on + strand, within CSW01_01365at 267.989 kb on + strand, within CSW01_01365at 267.990 kb on - strand, within CSW01_01365at 267.990 kb on - strand, within CSW01_01365at 267.999 kb on + strand, within CSW01_01365at 268.006 kb on - strand, within CSW01_01365at 268.019 kb on + strand, within CSW01_01365at 268.020 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.033 kb on + strand, within CSW01_01365at 268.044 kb on + strand, within CSW01_01365at 268.076 kb on + strand, within CSW01_01365at 268.076 kb on + strand, within CSW01_01365at 268.076 kb on + strand, within CSW01_01365at 268.084 kb on - strand, within CSW01_01365at 268.084 kb on - strand, within CSW01_01365

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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265,160 + CSW01_01350 0.56 +0.8
265,168 - CSW01_01350 0.56 -1.3
265,168 - CSW01_01350 0.56 -0.1
265,175 + CSW01_01350 0.57 +0.9
265,259 - CSW01_01350 0.61 +1.2
265,278 - CSW01_01350 0.62 +1.0
265,278 - CSW01_01350 0.62 +1.8
265,473 + CSW01_01350 0.73 -0.1
265,473 + CSW01_01350 0.73 +0.5
265,483 + CSW01_01350 0.73 -0.1
265,491 - CSW01_01350 0.74 -0.6
265,500 + CSW01_01350 0.74 +0.5
265,500 + CSW01_01350 0.74 +0.9
265,500 + CSW01_01350 0.74 +0.6
265,508 - CSW01_01350 0.75 +1.8
265,508 - CSW01_01350 0.75 +0.2
265,508 - CSW01_01350 0.75 -0.6
265,508 - CSW01_01350 0.75 +0.7
265,508 - CSW01_01350 0.75 +0.3
265,601 + CSW01_01350 0.80 -1.7
265,611 - CSW01_01350 0.80 -0.0
265,613 + CSW01_01350 0.80 +0.1
265,652 + CSW01_01350 0.82 -0.8
265,652 + CSW01_01350 0.82 +0.8
265,660 - CSW01_01350 0.83 +0.3
265,682 + CSW01_01350 0.84 -0.2
265,682 + CSW01_01350 0.84 -1.3
265,690 - CSW01_01350 0.84 +2.1
265,690 - CSW01_01350 0.84 +1.5
265,690 - CSW01_01350 0.84 +0.8
265,690 - CSW01_01350 0.84 +0.6
265,690 - CSW01_01350 0.84 +1.1
265,719 + CSW01_01350 0.86 +1.6
265,723 - CSW01_01350 0.86 +0.7
265,739 + CSW01_01350 0.87 +2.0
265,739 + CSW01_01350 0.87 +0.8
265,749 + CSW01_01350 0.88 +0.9
265,749 + CSW01_01350 0.88 +0.8
265,749 + CSW01_01350 0.88 +0.3
265,749 + CSW01_01350 0.88 +0.8
265,749 + CSW01_01350 0.88 +0.2
265,749 + CSW01_01350 0.88 +0.8
265,749 + CSW01_01350 0.88 +0.5
265,749 + CSW01_01350 0.88 +0.9
265,749 + CSW01_01350 0.88 +0.4
265,749 + CSW01_01350 0.88 +0.9
265,749 + CSW01_01350 0.88 -0.9
265,749 + CSW01_01350 0.88 -0.9
265,749 + CSW01_01350 0.88 +0.3
265,749 + CSW01_01350 0.88 +0.9
265,752 - CSW01_01350 0.88 -0.5
265,757 - CSW01_01350 0.88 +0.8
265,757 - CSW01_01350 0.88 +1.7
265,757 - CSW01_01350 0.88 +0.4
265,757 - CSW01_01350 0.88 +0.0
265,757 - CSW01_01350 0.88 +1.3
265,757 - CSW01_01350 0.88 -0.4
265,764 + CSW01_01350 0.88 -1.6
265,764 + CSW01_01350 0.88 +0.4
265,767 - CSW01_01350 0.89 -0.5
265,767 - CSW01_01350 0.89 +0.7
265,778 + CSW01_01350 0.89 -0.5
265,783 + CSW01_01350 0.89 +0.8
265,783 + CSW01_01350 0.89 +0.9
265,791 - CSW01_01350 0.90 +3.3
265,796 - +0.3
265,799 + -0.4
265,799 + +1.1
265,801 - -0.1
265,982 - -0.0
266,068 + +0.2
266,073 + +1.4
266,081 - -0.4
266,081 - -0.3
266,081 - +0.0
266,093 - +0.3
266,125 + -0.7
266,139 - -1.7
266,209 - +0.8
266,226 + -0.1
266,228 - +0.8
266,234 - CSW01_01355 0.10 -0.9
266,268 + CSW01_01355 0.14 -0.5
266,286 - CSW01_01355 0.16 +1.3
266,306 + CSW01_01355 0.18 -0.8
266,314 - CSW01_01355 0.19 +0.5
266,318 + CSW01_01355 0.19 +0.3
266,319 - CSW01_01355 0.19 +1.2
266,345 - CSW01_01355 0.22 +0.1
266,366 - CSW01_01355 0.24 -0.3
266,391 + CSW01_01355 0.27 +1.6
266,407 - CSW01_01355 0.28 -0.8
266,417 + CSW01_01355 0.29 +0.7
266,460 - CSW01_01355 0.34 -0.3
266,509 + CSW01_01355 0.39 -0.1
266,509 + CSW01_01355 0.39 +0.1
266,509 + CSW01_01355 0.39 +0.5
266,517 - CSW01_01355 0.40 +1.1
266,548 + CSW01_01355 0.43 +0.2
266,553 + CSW01_01355 0.43 +0.4
266,553 + CSW01_01355 0.43 -0.5
266,561 - CSW01_01355 0.44 +0.6
266,577 + CSW01_01355 0.46 +0.0
266,588 + CSW01_01355 0.47 +0.1
266,648 + CSW01_01355 0.53 +0.2
266,648 + CSW01_01355 0.53 -0.3
266,656 - CSW01_01355 0.54 +0.3
266,657 - CSW01_01355 0.54 -0.6
266,661 + CSW01_01355 0.54 +0.2
266,668 + CSW01_01355 0.55 +1.2
266,668 + CSW01_01355 0.55 -0.1
266,676 - CSW01_01355 0.56 +0.6
266,676 - CSW01_01355 0.56 -0.1
266,676 - CSW01_01355 0.56 +1.6
266,676 - CSW01_01355 0.56 -2.2
266,686 - CSW01_01355 0.57 +0.4
266,717 + CSW01_01355 0.60 +1.4
266,751 - CSW01_01355 0.64 +0.2
266,763 - CSW01_01355 0.65 +0.1
266,803 + CSW01_01355 0.69 +1.2
266,803 + CSW01_01355 0.69 -1.9
266,811 - CSW01_01355 0.70 +1.2
266,866 + CSW01_01355 0.76 +0.1
266,874 - CSW01_01355 0.76 +0.1
266,883 + CSW01_01355 0.77 -0.4
266,935 - CSW01_01355 0.83 +0.6
266,937 + CSW01_01355 0.83 -0.3
266,940 - CSW01_01355 0.83 -2.4
266,959 + CSW01_01355 0.85 -0.2
266,966 - CSW01_01355 0.86 +0.3
266,966 - CSW01_01355 0.86 -0.1
266,966 - CSW01_01355 0.86 +0.5
266,977 + CSW01_01355 0.87 -0.0
266,977 + CSW01_01355 0.87 +0.6
267,020 + +2.0
267,063 - +0.3
267,150 + +1.3
267,150 + +0.6
267,158 - +0.4
267,161 + +0.7
267,169 - CSW01_01360 0.10 +0.5
267,169 - CSW01_01360 0.10 +1.6
267,171 + CSW01_01360 0.11 +0.7
267,173 + CSW01_01360 0.11 +0.1
267,179 - CSW01_01360 0.12 +2.2
267,256 + CSW01_01360 0.26 +0.9
267,256 + CSW01_01360 0.26 +1.4
267,256 + CSW01_01360 0.26 +1.9
267,264 - CSW01_01360 0.28 -3.0
267,264 - CSW01_01360 0.28 +0.9
267,305 - CSW01_01360 0.35 +3.0
267,384 + CSW01_01360 0.49 +1.3
267,415 + CSW01_01360 0.55 +0.5
267,421 - CSW01_01360 0.56 +1.3
267,423 - CSW01_01360 0.56 +0.8
267,537 - CSW01_01360 0.77 +0.0
267,612 - +0.7
267,627 + -0.1
267,653 + +0.5
267,687 - +4.0
267,689 + -0.1
267,705 - +0.2
267,721 + -0.0
267,738 + +1.3
267,813 + +0.2
267,815 + -0.1
267,828 + -0.1
267,836 - -0.9
267,836 - +0.1
267,836 - +0.2
267,878 + +0.0
267,880 + -0.1
267,886 - +0.4
267,906 - +0.0
267,970 - CSW01_01365 0.12 -1.8
267,975 + CSW01_01365 0.12 +0.6
267,975 + CSW01_01365 0.12 +0.1
267,989 + CSW01_01365 0.13 -1.0
267,990 - CSW01_01365 0.13 +0.3
267,990 - CSW01_01365 0.13 +0.1
267,999 + CSW01_01365 0.14 +0.1
268,006 - CSW01_01365 0.14 -0.0
268,019 + CSW01_01365 0.15 -0.5
268,020 - CSW01_01365 0.15 -1.4
268,025 - CSW01_01365 0.16 +0.2
268,025 - CSW01_01365 0.16 -0.8
268,025 - CSW01_01365 0.16 -0.0
268,025 - CSW01_01365 0.16 -0.1
268,033 + CSW01_01365 0.16 -0.3
268,044 + CSW01_01365 0.17 +0.2
268,076 + CSW01_01365 0.20 +0.2
268,076 + CSW01_01365 0.20 +0.9
268,076 + CSW01_01365 0.20 -0.2
268,084 - CSW01_01365 0.20 -0.3
268,084 - CSW01_01365 0.20 -1.2

Or see this region's nucleotide sequence