Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01295

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01290 and CSW01_01295 overlap by 29 nucleotidesCSW01_01295 and CSW01_01300 overlap by 62 nucleotidesCSW01_01300 and CSW01_01305 are separated by 38 nucleotides CSW01_01290: CSW01_01290 - rfbG protein, at 251,556 to 252,947 _01290 CSW01_01295: CSW01_01295 - ABC transporter permease, at 252,919 to 253,713 _01295 CSW01_01300: CSW01_01300 - sugar ABC transporter, at 253,652 to 254,467 _01300 CSW01_01305: CSW01_01305 - acyl carrier protein, at 254,506 to 254,748 _01305 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1 2at 251.951 kb on + strand, within CSW01_01290at 251.956 kb on + strand, within CSW01_01290at 251.980 kb on + strand, within CSW01_01290at 251.980 kb on + strand, within CSW01_01290at 251.980 kb on + strand, within CSW01_01290at 251.981 kb on + strand, within CSW01_01290at 251.981 kb on + strand, within CSW01_01290at 251.981 kb on + strand, within CSW01_01290at 251.989 kb on - strand, within CSW01_01290at 251.989 kb on - strand, within CSW01_01290at 252.000 kb on + strand, within CSW01_01290at 252.008 kb on - strand, within CSW01_01290at 252.023 kb on + strand, within CSW01_01290at 252.031 kb on - strand, within CSW01_01290at 252.033 kb on + strand, within CSW01_01290at 252.161 kb on + strand, within CSW01_01290at 252.198 kb on - strand, within CSW01_01290at 252.198 kb on - strand, within CSW01_01290at 252.223 kb on - strand, within CSW01_01290at 252.235 kb on - strand, within CSW01_01290at 252.247 kb on + strand, within CSW01_01290at 252.247 kb on + strand, within CSW01_01290at 252.318 kb on + strand, within CSW01_01290at 252.326 kb on - strand, within CSW01_01290at 252.327 kb on - strand, within CSW01_01290at 252.380 kb on - strand, within CSW01_01290at 252.425 kb on + strand, within CSW01_01290at 252.432 kb on + strand, within CSW01_01290at 252.440 kb on - strand, within CSW01_01290at 252.454 kb on - strand, within CSW01_01290at 252.454 kb on - strand, within CSW01_01290at 252.471 kb on + strand, within CSW01_01290at 252.486 kb on - strand, within CSW01_01290at 252.554 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.562 kb on - strand, within CSW01_01290at 252.562 kb on - strand, within CSW01_01290at 252.656 kb on + strand, within CSW01_01290at 252.665 kb on - strand, within CSW01_01290at 252.692 kb on + strand, within CSW01_01290at 252.692 kb on + strand, within CSW01_01290at 252.700 kb on - strand, within CSW01_01290at 252.700 kb on - strand, within CSW01_01290at 252.700 kb on - strand, within CSW01_01290at 252.719 kb on + strand, within CSW01_01290at 252.727 kb on - strand, within CSW01_01290at 252.753 kb on + strand, within CSW01_01290at 252.757 kb on - strand, within CSW01_01290at 252.761 kb on - strand, within CSW01_01290at 252.761 kb on - strand, within CSW01_01290at 253.087 kb on - strand, within CSW01_01295at 253.212 kb on + strand, within CSW01_01295at 253.240 kb on + strand, within CSW01_01295at 253.249 kb on - strand, within CSW01_01295at 253.329 kb on - strand, within CSW01_01295at 253.453 kb on - strand, within CSW01_01295at 253.523 kb on - strand, within CSW01_01295at 253.746 kb on + strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.947 kb on - strand, within CSW01_01300at 253.979 kb on - strand, within CSW01_01300at 253.979 kb on - strand, within CSW01_01300at 253.979 kb on - strand, within CSW01_01300at 253.979 kb on - strand, within CSW01_01300at 254.056 kb on - strand, within CSW01_01300at 254.056 kb on - strand, within CSW01_01300at 254.075 kb on + strand, within CSW01_01300at 254.177 kb on - strand, within CSW01_01300at 254.196 kb on - strand, within CSW01_01300at 254.196 kb on - strand, within CSW01_01300at 254.211 kb on + strand, within CSW01_01300at 254.327 kb on - strand, within CSW01_01300at 254.366 kb on - strand, within CSW01_01300at 254.388 kb on - strandat 254.590 kb on + strand, within CSW01_01305at 254.602 kb on + strand, within CSW01_01305at 254.602 kb on + strand, within CSW01_01305at 254.602 kb on + strand, within CSW01_01305at 254.622 kb on - strand, within CSW01_01305at 254.624 kb on + strand, within CSW01_01305at 254.624 kb on + strand, within CSW01_01305at 254.627 kb on - strand, within CSW01_01305at 254.634 kb on + strand, within CSW01_01305at 254.639 kb on + strand, within CSW01_01305at 254.682 kb on - strand, within CSW01_01305

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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251,951 + CSW01_01290 0.28 -0.1
251,956 + CSW01_01290 0.29 -0.2
251,980 + CSW01_01290 0.30 +1.5
251,980 + CSW01_01290 0.30 +0.4
251,980 + CSW01_01290 0.30 +0.4
251,981 + CSW01_01290 0.31 -2.7
251,981 + CSW01_01290 0.31 +0.1
251,981 + CSW01_01290 0.31 +0.7
251,989 - CSW01_01290 0.31 +0.3
251,989 - CSW01_01290 0.31 +1.5
252,000 + CSW01_01290 0.32 +0.1
252,008 - CSW01_01290 0.32 +1.4
252,023 + CSW01_01290 0.34 +0.8
252,031 - CSW01_01290 0.34 -1.0
252,033 + CSW01_01290 0.34 +1.4
252,161 + CSW01_01290 0.43 +0.8
252,198 - CSW01_01290 0.46 +0.9
252,198 - CSW01_01290 0.46 +0.5
252,223 - CSW01_01290 0.48 +1.2
252,235 - CSW01_01290 0.49 -0.7
252,247 + CSW01_01290 0.50 +0.7
252,247 + CSW01_01290 0.50 -0.2
252,318 + CSW01_01290 0.55 +1.8
252,326 - CSW01_01290 0.55 +0.1
252,327 - CSW01_01290 0.55 +1.8
252,380 - CSW01_01290 0.59 +1.8
252,425 + CSW01_01290 0.62 +0.9
252,432 + CSW01_01290 0.63 +1.2
252,440 - CSW01_01290 0.64 +1.4
252,454 - CSW01_01290 0.65 +0.5
252,454 - CSW01_01290 0.65 +0.4
252,471 + CSW01_01290 0.66 +0.9
252,486 - CSW01_01290 0.67 +0.8
252,554 + CSW01_01290 0.72 +0.7
252,556 + CSW01_01290 0.72 +1.0
252,556 + CSW01_01290 0.72 +0.7
252,556 + CSW01_01290 0.72 +0.4
252,556 + CSW01_01290 0.72 +1.1
252,556 + CSW01_01290 0.72 +0.8
252,556 + CSW01_01290 0.72 +0.7
252,556 + CSW01_01290 0.72 +0.7
252,562 - CSW01_01290 0.72 +0.1
252,562 - CSW01_01290 0.72 +1.8
252,656 + CSW01_01290 0.79 +0.6
252,665 - CSW01_01290 0.80 +0.6
252,692 + CSW01_01290 0.82 -0.2
252,692 + CSW01_01290 0.82 +0.7
252,700 - CSW01_01290 0.82 -0.2
252,700 - CSW01_01290 0.82 +1.1
252,700 - CSW01_01290 0.82 -1.5
252,719 + CSW01_01290 0.84 +0.6
252,727 - CSW01_01290 0.84 +1.1
252,753 + CSW01_01290 0.86 +0.5
252,757 - CSW01_01290 0.86 -0.5
252,761 - CSW01_01290 0.87 -2.5
252,761 - CSW01_01290 0.87 +0.4
253,087 - CSW01_01295 0.21 -0.6
253,212 + CSW01_01295 0.37 -0.6
253,240 + CSW01_01295 0.40 -2.2
253,249 - CSW01_01295 0.42 -1.2
253,329 - CSW01_01295 0.52 -2.4
253,453 - CSW01_01295 0.67 -0.6
253,523 - CSW01_01295 0.76 -1.2
253,746 + CSW01_01300 0.12 -2.7
253,754 - CSW01_01300 0.12 -2.4
253,754 - CSW01_01300 0.12 +1.7
253,754 - CSW01_01300 0.12 -2.4
253,754 - CSW01_01300 0.12 -2.7
253,754 - CSW01_01300 0.12 -2.7
253,947 - CSW01_01300 0.36 -2.2
253,979 - CSW01_01300 0.40 -1.6
253,979 - CSW01_01300 0.40 -2.4
253,979 - CSW01_01300 0.40 -2.6
253,979 - CSW01_01300 0.40 +0.4
254,056 - CSW01_01300 0.50 +0.4
254,056 - CSW01_01300 0.50 -1.2
254,075 + CSW01_01300 0.52 +0.4
254,177 - CSW01_01300 0.64 -1.6
254,196 - CSW01_01300 0.67 -1.6
254,196 - CSW01_01300 0.67 -1.6
254,211 + CSW01_01300 0.69 -0.2
254,327 - CSW01_01300 0.83 -1.2
254,366 - CSW01_01300 0.88 -1.8
254,388 - +2.2
254,590 + CSW01_01305 0.35 +0.4
254,602 + CSW01_01305 0.40 +2.3
254,602 + CSW01_01305 0.40 -1.7
254,602 + CSW01_01305 0.40 +1.1
254,622 - CSW01_01305 0.48 +0.1
254,624 + CSW01_01305 0.49 +0.6
254,624 + CSW01_01305 0.49 +1.6
254,627 - CSW01_01305 0.50 +0.4
254,634 + CSW01_01305 0.53 +1.5
254,639 + CSW01_01305 0.55 +1.2
254,682 - CSW01_01305 0.72 +0.8

Or see this region's nucleotide sequence