Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01030

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_01025 and CSW01_01030 are separated by 74 nucleotidesCSW01_01030 and CSW01_01035 are separated by 147 nucleotides CSW01_01025: CSW01_01025 - LysE family translocator, at 197,131 to 197,799 _01025 CSW01_01030: CSW01_01030 - AraC family transcriptional regulator, at 197,874 to 198,686 _01030 CSW01_01035: CSW01_01035 - gamma-glutamyltransferase, at 198,834 to 200,600 _01035 Position (kb) 197 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 196.887 kb on + strandat 196.894 kb on + strandat 196.895 kb on - strandat 196.904 kb on + strandat 196.940 kb on + strandat 196.942 kb on - strandat 197.137 kb on - strandat 197.154 kb on - strandat 197.154 kb on - strandat 197.197 kb on + strandat 197.205 kb on - strand, within CSW01_01025at 197.205 kb on - strand, within CSW01_01025at 197.205 kb on - strand, within CSW01_01025at 197.205 kb on - strand, within CSW01_01025at 197.218 kb on - strand, within CSW01_01025at 197.219 kb on - strand, within CSW01_01025at 197.259 kb on + strand, within CSW01_01025at 197.304 kb on + strand, within CSW01_01025at 197.312 kb on - strand, within CSW01_01025at 197.312 kb on - strand, within CSW01_01025at 197.313 kb on - strand, within CSW01_01025at 197.338 kb on - strand, within CSW01_01025at 197.338 kb on - strand, within CSW01_01025at 197.349 kb on - strand, within CSW01_01025at 197.373 kb on - strand, within CSW01_01025at 197.380 kb on - strand, within CSW01_01025at 197.471 kb on - strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.475 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.485 kb on - strand, within CSW01_01025at 197.492 kb on + strand, within CSW01_01025at 197.492 kb on + strand, within CSW01_01025at 197.513 kb on + strand, within CSW01_01025at 197.536 kb on - strand, within CSW01_01025at 197.548 kb on - strand, within CSW01_01025at 197.566 kb on - strand, within CSW01_01025at 197.576 kb on + strand, within CSW01_01025at 197.693 kb on - strand, within CSW01_01025at 197.700 kb on + strand, within CSW01_01025at 197.700 kb on + strand, within CSW01_01025at 197.707 kb on + strand, within CSW01_01025at 197.708 kb on - strand, within CSW01_01025at 197.715 kb on - strand, within CSW01_01025at 197.743 kb on + strandat 197.767 kb on + strandat 197.775 kb on - strandat 197.776 kb on + strandat 197.889 kb on + strandat 197.899 kb on + strandat 197.918 kb on + strandat 197.934 kb on + strandat 197.967 kb on + strand, within CSW01_01030at 198.002 kb on + strand, within CSW01_01030at 198.014 kb on + strand, within CSW01_01030at 198.014 kb on + strand, within CSW01_01030at 198.027 kb on - strand, within CSW01_01030at 198.057 kb on + strand, within CSW01_01030at 198.065 kb on - strand, within CSW01_01030at 198.160 kb on + strand, within CSW01_01030at 198.160 kb on + strand, within CSW01_01030at 198.168 kb on - strand, within CSW01_01030at 198.178 kb on - strand, within CSW01_01030at 198.194 kb on + strand, within CSW01_01030at 198.194 kb on + strand, within CSW01_01030at 198.202 kb on - strand, within CSW01_01030at 198.202 kb on - strand, within CSW01_01030at 198.202 kb on - strand, within CSW01_01030at 198.204 kb on + strand, within CSW01_01030at 198.209 kb on + strand, within CSW01_01030at 198.209 kb on + strand, within CSW01_01030at 198.239 kb on + strand, within CSW01_01030at 198.239 kb on + strand, within CSW01_01030at 198.239 kb on + strand, within CSW01_01030at 198.239 kb on + strand, within CSW01_01030at 198.246 kb on + strand, within CSW01_01030at 198.278 kb on + strand, within CSW01_01030at 198.278 kb on + strand, within CSW01_01030at 198.286 kb on - strand, within CSW01_01030at 198.314 kb on + strand, within CSW01_01030at 198.330 kb on - strand, within CSW01_01030at 198.330 kb on - strand, within CSW01_01030at 198.356 kb on + strand, within CSW01_01030at 198.356 kb on + strand, within CSW01_01030at 198.356 kb on + strand, within CSW01_01030at 198.364 kb on - strand, within CSW01_01030at 198.364 kb on - strand, within CSW01_01030at 198.364 kb on - strand, within CSW01_01030at 198.364 kb on - strand, within CSW01_01030at 198.364 kb on - strand, within CSW01_01030at 198.364 kb on - strand, within CSW01_01030at 198.401 kb on + strand, within CSW01_01030at 198.409 kb on - strand, within CSW01_01030at 198.429 kb on + strand, within CSW01_01030at 198.429 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.456 kb on - strand, within CSW01_01030at 198.456 kb on - strand, within CSW01_01030at 198.484 kb on + strand, within CSW01_01030at 198.489 kb on + strand, within CSW01_01030at 198.489 kb on + strand, within CSW01_01030at 198.497 kb on - strand, within CSW01_01030at 198.497 kb on - strand, within CSW01_01030at 198.504 kb on + strand, within CSW01_01030at 198.512 kb on - strand, within CSW01_01030at 198.512 kb on - strand, within CSW01_01030at 198.512 kb on - strand, within CSW01_01030at 198.553 kb on + strand, within CSW01_01030at 198.630 kb on - strandat 198.630 kb on - strandat 198.630 kb on - strandat 198.657 kb on - strandat 198.729 kb on - strandat 198.781 kb on - strandat 198.818 kb on - strandat 198.846 kb on + strandat 198.874 kb on + strandat 198.874 kb on - strandat 198.877 kb on + strandat 198.878 kb on + strandat 198.878 kb on + strandat 198.878 kb on + strandat 198.886 kb on - strandat 198.886 kb on - strandat 198.887 kb on - strandat 198.893 kb on - strandat 198.914 kb on + strandat 198.914 kb on + strandat 198.914 kb on + strandat 198.914 kb on + strandat 198.914 kb on + strandat 198.914 kb on + strandat 198.919 kb on + strandat 198.919 kb on + strandat 198.919 kb on + strandat 198.922 kb on - strandat 198.922 kb on - strandat 198.922 kb on - strandat 198.922 kb on - strandat 198.922 kb on - strandat 198.922 kb on - strandat 198.922 kb on - strandat 198.922 kb on - strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.967 kb on + strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.975 kb on - strandat 198.977 kb on + strandat 198.985 kb on - strandat 199.148 kb on + strand, within CSW01_01035at 199.151 kb on - strand, within CSW01_01035at 199.155 kb on + strand, within CSW01_01035at 199.168 kb on - strand, within CSW01_01035at 199.168 kb on - strand, within CSW01_01035at 199.202 kb on + strand, within CSW01_01035at 199.210 kb on - strand, within CSW01_01035at 199.210 kb on - strand, within CSW01_01035at 199.236 kb on - strand, within CSW01_01035at 199.236 kb on - strand, within CSW01_01035at 199.262 kb on + strand, within CSW01_01035at 199.270 kb on - strand, within CSW01_01035at 199.274 kb on + strand, within CSW01_01035at 199.363 kb on - strand, within CSW01_01035at 199.388 kb on - strand, within CSW01_01035at 199.388 kb on - strand, within CSW01_01035at 199.407 kb on + strand, within CSW01_01035at 199.415 kb on - strand, within CSW01_01035at 199.452 kb on + strand, within CSW01_01035at 199.452 kb on + strand, within CSW01_01035at 199.452 kb on + strand, within CSW01_01035at 199.452 kb on + strand, within CSW01_01035at 199.452 kb on + strand, within CSW01_01035at 199.460 kb on - strand, within CSW01_01035at 199.460 kb on - strand, within CSW01_01035at 199.460 kb on - strand, within CSW01_01035at 199.460 kb on - strand, within CSW01_01035at 199.460 kb on - strand, within CSW01_01035at 199.460 kb on - strand, within CSW01_01035at 199.473 kb on + strand, within CSW01_01035at 199.500 kb on + strand, within CSW01_01035at 199.500 kb on + strand, within CSW01_01035at 199.515 kb on + strand, within CSW01_01035at 199.515 kb on + strand, within CSW01_01035at 199.515 kb on + strand, within CSW01_01035at 199.523 kb on - strand, within CSW01_01035at 199.549 kb on + strand, within CSW01_01035at 199.549 kb on + strand, within CSW01_01035at 199.549 kb on + strand, within CSW01_01035at 199.549 kb on + strand, within CSW01_01035at 199.557 kb on - strand, within CSW01_01035at 199.588 kb on - strand, within CSW01_01035at 199.593 kb on + strand, within CSW01_01035at 199.593 kb on + strand, within CSW01_01035at 199.593 kb on + strand, within CSW01_01035at 199.599 kb on - strand, within CSW01_01035at 199.601 kb on - strand, within CSW01_01035at 199.601 kb on - strand, within CSW01_01035at 199.601 kb on - strand, within CSW01_01035at 199.609 kb on + strand, within CSW01_01035at 199.627 kb on + strand, within CSW01_01035at 199.627 kb on + strand, within CSW01_01035at 199.634 kb on - strand, within CSW01_01035at 199.684 kb on - strand, within CSW01_01035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
remove
196,887 + -0.9
196,894 + -0.6
196,895 - +0.4
196,904 + -0.6
196,940 + -0.1
196,942 - -0.5
197,137 - -0.2
197,154 - -0.1
197,154 - -0.5
197,197 + -0.7
197,205 - CSW01_01025 0.11 -0.2
197,205 - CSW01_01025 0.11 -0.6
197,205 - CSW01_01025 0.11 +0.3
197,205 - CSW01_01025 0.11 +1.6
197,218 - CSW01_01025 0.13 +0.5
197,219 - CSW01_01025 0.13 -0.6
197,259 + CSW01_01025 0.19 +0.6
197,304 + CSW01_01025 0.26 +0.1
197,312 - CSW01_01025 0.27 -2.6
197,312 - CSW01_01025 0.27 -0.4
197,313 - CSW01_01025 0.27 -0.1
197,338 - CSW01_01025 0.31 -1.3
197,338 - CSW01_01025 0.31 +1.9
197,349 - CSW01_01025 0.33 -0.7
197,373 - CSW01_01025 0.36 +0.1
197,380 - CSW01_01025 0.37 +1.1
197,471 - CSW01_01025 0.51 -0.4
197,472 + CSW01_01025 0.51 -1.0
197,472 + CSW01_01025 0.51 -1.3
197,472 + CSW01_01025 0.51 +0.1
197,472 + CSW01_01025 0.51 -1.1
197,472 + CSW01_01025 0.51 +0.4
197,475 - CSW01_01025 0.51 -1.6
197,480 - CSW01_01025 0.52 +0.2
197,480 - CSW01_01025 0.52 +0.2
197,480 - CSW01_01025 0.52 -0.2
197,480 - CSW01_01025 0.52 -1.7
197,480 - CSW01_01025 0.52 -1.5
197,480 - CSW01_01025 0.52 -0.4
197,480 - CSW01_01025 0.52 +1.2
197,480 - CSW01_01025 0.52 -1.4
197,480 - CSW01_01025 0.52 +0.3
197,480 - CSW01_01025 0.52 +0.0
197,480 - CSW01_01025 0.52 +0.8
197,485 - CSW01_01025 0.53 +0.2
197,492 + CSW01_01025 0.54 -0.4
197,492 + CSW01_01025 0.54 -2.1
197,513 + CSW01_01025 0.57 +0.0
197,536 - CSW01_01025 0.61 +0.2
197,548 - CSW01_01025 0.62 -0.7
197,566 - CSW01_01025 0.65 +1.6
197,576 + CSW01_01025 0.67 -1.8
197,693 - CSW01_01025 0.84 +0.8
197,700 + CSW01_01025 0.85 -0.9
197,700 + CSW01_01025 0.85 -0.4
197,707 + CSW01_01025 0.86 +1.2
197,708 - CSW01_01025 0.86 +0.5
197,715 - CSW01_01025 0.87 +0.0
197,743 + +1.4
197,767 + +0.7
197,775 - +0.8
197,776 + -0.1
197,889 + +0.1
197,899 + +0.2
197,918 + -0.4
197,934 + +0.3
197,967 + CSW01_01030 0.11 +0.2
198,002 + CSW01_01030 0.16 +0.1
198,014 + CSW01_01030 0.17 +0.2
198,014 + CSW01_01030 0.17 +2.0
198,027 - CSW01_01030 0.19 +0.6
198,057 + CSW01_01030 0.23 -1.4
198,065 - CSW01_01030 0.23 -0.6
198,160 + CSW01_01030 0.35 +0.2
198,160 + CSW01_01030 0.35 +0.3
198,168 - CSW01_01030 0.36 +0.6
198,178 - CSW01_01030 0.37 +0.4
198,194 + CSW01_01030 0.39 +0.6
198,194 + CSW01_01030 0.39 +2.4
198,202 - CSW01_01030 0.40 +0.1
198,202 - CSW01_01030 0.40 +0.3
198,202 - CSW01_01030 0.40 +0.0
198,204 + CSW01_01030 0.41 -0.8
198,209 + CSW01_01030 0.41 -0.4
198,209 + CSW01_01030 0.41 +0.5
198,239 + CSW01_01030 0.45 -1.0
198,239 + CSW01_01030 0.45 -0.2
198,239 + CSW01_01030 0.45 +0.3
198,239 + CSW01_01030 0.45 -0.0
198,246 + CSW01_01030 0.46 +0.5
198,278 + CSW01_01030 0.50 +0.4
198,278 + CSW01_01030 0.50 +0.5
198,286 - CSW01_01030 0.51 -0.4
198,314 + CSW01_01030 0.54 -0.0
198,330 - CSW01_01030 0.56 +1.0
198,330 - CSW01_01030 0.56 +0.3
198,356 + CSW01_01030 0.59 +0.2
198,356 + CSW01_01030 0.59 +1.3
198,356 + CSW01_01030 0.59 -2.5
198,364 - CSW01_01030 0.60 -0.3
198,364 - CSW01_01030 0.60 -0.0
198,364 - CSW01_01030 0.60 +0.4
198,364 - CSW01_01030 0.60 +0.7
198,364 - CSW01_01030 0.60 -0.7
198,364 - CSW01_01030 0.60 +0.6
198,401 + CSW01_01030 0.65 +0.1
198,409 - CSW01_01030 0.66 +0.4
198,429 + CSW01_01030 0.68 -0.3
198,429 + CSW01_01030 0.68 -0.4
198,448 + CSW01_01030 0.71 -0.1
198,448 + CSW01_01030 0.71 +0.5
198,448 + CSW01_01030 0.71 -0.2
198,448 + CSW01_01030 0.71 -0.9
198,448 + CSW01_01030 0.71 -1.6
198,448 + CSW01_01030 0.71 -0.3
198,448 + CSW01_01030 0.71 +0.2
198,448 + CSW01_01030 0.71 +0.5
198,456 - CSW01_01030 0.72 +0.1
198,456 - CSW01_01030 0.72 -0.7
198,484 + CSW01_01030 0.75 +2.4
198,489 + CSW01_01030 0.76 -0.2
198,489 + CSW01_01030 0.76 +1.1
198,497 - CSW01_01030 0.77 -0.4
198,497 - CSW01_01030 0.77 -0.2
198,504 + CSW01_01030 0.77 -2.1
198,512 - CSW01_01030 0.78 +0.4
198,512 - CSW01_01030 0.78 +0.1
198,512 - CSW01_01030 0.78 +0.3
198,553 + CSW01_01030 0.84 -0.0
198,630 - +0.1
198,630 - -0.1
198,630 - +0.9
198,657 - -0.4
198,729 - +0.0
198,781 - -0.8
198,818 - +0.7
198,846 + +0.6
198,874 + +0.2
198,874 - -2.1
198,877 + +0.2
198,878 + +0.0
198,878 + +2.3
198,878 + +0.5
198,886 - +0.7
198,886 - +0.6
198,887 - -0.5
198,893 - -1.6
198,914 + +0.4
198,914 + -0.1
198,914 + +0.4
198,914 + +0.6
198,914 + -0.0
198,914 + +0.3
198,919 + -1.7
198,919 + +0.7
198,919 + +0.1
198,922 - +0.0
198,922 - +1.9
198,922 - -0.4
198,922 - +0.0
198,922 - -0.1
198,922 - +0.3
198,922 - -0.3
198,922 - -0.2
198,967 + +1.4
198,967 + +0.8
198,967 + +0.4
198,967 + +1.0
198,967 + -0.6
198,967 + +0.3
198,967 + +0.4
198,967 + +0.7
198,967 + +1.4
198,967 + +0.0
198,967 + +0.4
198,967 + +1.2
198,967 + -0.8
198,967 + -2.1
198,967 + +1.4
198,967 + +0.4
198,967 + +0.8
198,967 + +0.7
198,975 - +0.0
198,975 - +0.4
198,975 - -0.2
198,975 - -0.8
198,975 - -0.4
198,975 - +0.9
198,975 - +0.3
198,975 - -0.8
198,975 - +2.4
198,975 - -1.0
198,975 - +0.6
198,975 - +0.4
198,975 - +0.3
198,975 - +0.6
198,975 - -0.3
198,975 - -0.2
198,975 - -1.0
198,975 - +0.1
198,975 - -1.6
198,977 + -1.1
198,985 - -0.1
199,148 + CSW01_01035 0.18 +0.2
199,151 - CSW01_01035 0.18 -1.4
199,155 + CSW01_01035 0.18 +1.3
199,168 - CSW01_01035 0.19 -1.2
199,168 - CSW01_01035 0.19 -0.3
199,202 + CSW01_01035 0.21 -0.6
199,210 - CSW01_01035 0.21 -2.9
199,210 - CSW01_01035 0.21 +0.7
199,236 - CSW01_01035 0.23 +0.3
199,236 - CSW01_01035 0.23 +0.8
199,262 + CSW01_01035 0.24 +0.5
199,270 - CSW01_01035 0.25 -0.9
199,274 + CSW01_01035 0.25 -0.3
199,363 - CSW01_01035 0.30 -0.2
199,388 - CSW01_01035 0.31 +0.3
199,388 - CSW01_01035 0.31 -0.9
199,407 + CSW01_01035 0.32 +0.2
199,415 - CSW01_01035 0.33 -0.5
199,452 + CSW01_01035 0.35 -2.7
199,452 + CSW01_01035 0.35 -0.7
199,452 + CSW01_01035 0.35 -0.2
199,452 + CSW01_01035 0.35 +0.2
199,452 + CSW01_01035 0.35 -0.0
199,460 - CSW01_01035 0.35 -0.3
199,460 - CSW01_01035 0.35 -0.5
199,460 - CSW01_01035 0.35 -0.6
199,460 - CSW01_01035 0.35 -0.5
199,460 - CSW01_01035 0.35 +0.1
199,460 - CSW01_01035 0.35 -0.6
199,473 + CSW01_01035 0.36 -0.5
199,500 + CSW01_01035 0.38 +0.3
199,500 + CSW01_01035 0.38 -1.5
199,515 + CSW01_01035 0.39 +0.4
199,515 + CSW01_01035 0.39 +0.8
199,515 + CSW01_01035 0.39 +0.3
199,523 - CSW01_01035 0.39 +0.6
199,549 + CSW01_01035 0.40 +0.0
199,549 + CSW01_01035 0.40 -0.6
199,549 + CSW01_01035 0.40 +1.2
199,549 + CSW01_01035 0.40 -1.2
199,557 - CSW01_01035 0.41 +0.2
199,588 - CSW01_01035 0.43 +0.8
199,593 + CSW01_01035 0.43 +1.1
199,593 + CSW01_01035 0.43 +0.7
199,593 + CSW01_01035 0.43 +1.0
199,599 - CSW01_01035 0.43 -0.5
199,601 - CSW01_01035 0.43 -0.1
199,601 - CSW01_01035 0.43 +1.6
199,601 - CSW01_01035 0.43 +0.9
199,609 + CSW01_01035 0.44 -0.6
199,627 + CSW01_01035 0.45 -0.1
199,627 + CSW01_01035 0.45 -0.7
199,634 - CSW01_01035 0.45 -2.9
199,684 - CSW01_01035 0.48 -0.3

Or see this region's nucleotide sequence