Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00950

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00935 and CSW01_00940 are separated by 66 nucleotidesCSW01_00940 and CSW01_00945 are separated by 208 nucleotidesCSW01_00945 and CSW01_00950 are separated by 102 nucleotidesCSW01_00950 and CSW01_00955 are separated by 416 nucleotidesCSW01_00955 and CSW01_00960 are separated by 248 nucleotides CSW01_00935: CSW01_00935 - deoxycytidylate deaminase, at 175,344 to 176,942 _00935 CSW01_00940: CSW01_00940 - hypothetical protein, at 177,009 to 177,242 _00940 CSW01_00945: CSW01_00945 - XRE family transcriptional regulator, at 177,451 to 177,759 _00945 CSW01_00950: CSW01_00950 - transcriptional regulator, at 177,862 to 178,425 _00950 CSW01_00955: CSW01_00955 - hypothetical protein, at 178,842 to 179,090 _00955 CSW01_00960: CSW01_00960 - patatin, at 179,339 to 180,406 _00960 Position (kb) 177 178 179Strain fitness (log2 ratio) -2 -1 0 1 2 3at 176.902 kb on - strandat 176.923 kb on + strandat 177.010 kb on - strandat 177.123 kb on - strand, within CSW01_00940at 177.152 kb on - strand, within CSW01_00940at 177.265 kb on - strandat 177.274 kb on - strandat 177.490 kb on + strand, within CSW01_00945at 177.492 kb on + strand, within CSW01_00945at 177.492 kb on + strand, within CSW01_00945at 177.511 kb on + strand, within CSW01_00945at 177.528 kb on - strand, within CSW01_00945at 177.598 kb on + strand, within CSW01_00945at 177.601 kb on + strand, within CSW01_00945at 177.611 kb on + strand, within CSW01_00945at 177.614 kb on - strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.619 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.634 kb on - strand, within CSW01_00945at 177.669 kb on + strand, within CSW01_00945at 177.671 kb on + strand, within CSW01_00945at 177.671 kb on + strand, within CSW01_00945at 177.679 kb on - strand, within CSW01_00945at 177.690 kb on - strand, within CSW01_00945at 177.861 kb on + strandat 177.867 kb on - strandat 177.874 kb on + strandat 177.879 kb on + strandat 177.882 kb on - strandat 177.884 kb on + strandat 177.884 kb on + strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.894 kb on + strandat 177.961 kb on - strand, within CSW01_00950at 177.978 kb on + strand, within CSW01_00950at 177.996 kb on - strand, within CSW01_00950at 178.044 kb on + strand, within CSW01_00950at 178.044 kb on + strand, within CSW01_00950at 178.051 kb on + strand, within CSW01_00950at 178.052 kb on + strand, within CSW01_00950at 178.088 kb on - strand, within CSW01_00950at 178.155 kb on - strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.163 kb on + strand, within CSW01_00950at 178.166 kb on - strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.174 kb on + strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.199 kb on - strand, within CSW01_00950at 178.201 kb on + strand, within CSW01_00950at 178.209 kb on + strand, within CSW01_00950at 178.211 kb on - strand, within CSW01_00950at 178.303 kb on - strand, within CSW01_00950at 178.328 kb on + strand, within CSW01_00950at 178.329 kb on + strand, within CSW01_00950at 178.329 kb on + strand, within CSW01_00950at 178.330 kb on + strand, within CSW01_00950at 178.338 kb on - strand, within CSW01_00950at 178.338 kb on - strand, within CSW01_00950at 178.338 kb on - strand, within CSW01_00950at 178.356 kb on + strand, within CSW01_00950at 178.389 kb on + strandat 178.523 kb on + strandat 178.530 kb on + strandat 178.538 kb on + strandat 178.546 kb on - strandat 178.565 kb on + strandat 178.565 kb on + strandat 178.644 kb on - strandat 178.715 kb on + strandat 178.725 kb on + strandat 178.745 kb on + strandat 178.784 kb on - strandat 178.784 kb on - strandat 178.870 kb on - strand, within CSW01_00955at 178.870 kb on - strand, within CSW01_00955at 178.878 kb on + strand, within CSW01_00955at 178.899 kb on - strand, within CSW01_00955at 178.966 kb on + strand, within CSW01_00955at 178.966 kb on + strand, within CSW01_00955at 178.974 kb on - strand, within CSW01_00955at 179.011 kb on - strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.055 kb on + strand, within CSW01_00955at 179.055 kb on + strand, within CSW01_00955at 179.097 kb on + strandat 179.097 kb on + strandat 179.148 kb on - strandat 179.201 kb on + strandat 179.229 kb on + strandat 179.229 kb on + strandat 179.229 kb on + strandat 179.230 kb on + strandat 179.230 kb on + strandat 179.237 kb on - strandat 179.237 kb on - strandat 179.237 kb on - strandat 179.237 kb on - strandat 179.241 kb on + strandat 179.250 kb on - strandat 179.251 kb on + strandat 179.251 kb on + strandat 179.251 kb on + strandat 179.251 kb on + strandat 179.270 kb on - strandat 179.312 kb on - strandat 179.314 kb on - strandat 179.355 kb on + strandat 179.358 kb on + strandat 179.422 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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176,902 - -0.0
176,923 + +0.3
177,010 - +0.3
177,123 - CSW01_00940 0.49 +0.4
177,152 - CSW01_00940 0.61 +0.4
177,265 - -2.1
177,274 - -0.7
177,490 + CSW01_00945 0.13 -0.3
177,492 + CSW01_00945 0.13 +0.6
177,492 + CSW01_00945 0.13 -0.6
177,511 + CSW01_00945 0.19 +0.1
177,528 - CSW01_00945 0.25 -0.0
177,598 + CSW01_00945 0.48 -0.1
177,601 + CSW01_00945 0.49 +0.7
177,611 + CSW01_00945 0.52 -1.0
177,614 - CSW01_00945 0.53 -0.5
177,616 + CSW01_00945 0.53 -0.2
177,616 + CSW01_00945 0.53 +0.3
177,616 + CSW01_00945 0.53 +0.7
177,616 + CSW01_00945 0.53 +0.4
177,619 - CSW01_00945 0.54 +0.7
177,624 - CSW01_00945 0.56 +0.4
177,624 - CSW01_00945 0.56 -0.3
177,624 - CSW01_00945 0.56 -0.1
177,624 - CSW01_00945 0.56 +0.1
177,624 - CSW01_00945 0.56 -0.3
177,624 - CSW01_00945 0.56 -0.1
177,624 - CSW01_00945 0.56 +0.2
177,634 - CSW01_00945 0.59 -0.0
177,669 + CSW01_00945 0.71 +0.2
177,671 + CSW01_00945 0.71 -1.3
177,671 + CSW01_00945 0.71 -1.4
177,679 - CSW01_00945 0.74 -0.5
177,690 - CSW01_00945 0.77 +0.6
177,861 + -0.1
177,867 - -0.2
177,874 + +1.1
177,879 + +0.5
177,882 - -0.1
177,884 + +1.2
177,884 + -0.2
177,892 - +0.0
177,892 - +0.4
177,892 - -0.7
177,892 - +0.4
177,894 + -1.1
177,961 - CSW01_00950 0.18 -0.8
177,978 + CSW01_00950 0.21 -0.9
177,996 - CSW01_00950 0.24 +0.4
178,044 + CSW01_00950 0.32 +0.1
178,044 + CSW01_00950 0.32 -0.2
178,051 + CSW01_00950 0.34 +1.2
178,052 + CSW01_00950 0.34 +1.0
178,088 - CSW01_00950 0.40 +0.3
178,155 - CSW01_00950 0.52 +0.9
178,158 + CSW01_00950 0.52 +0.4
178,158 + CSW01_00950 0.52 -0.2
178,158 + CSW01_00950 0.52 +0.1
178,163 + CSW01_00950 0.53 -0.0
178,166 - CSW01_00950 0.54 -1.8
178,168 + CSW01_00950 0.54 +0.8
178,168 + CSW01_00950 0.54 -1.3
178,168 + CSW01_00950 0.54 +0.5
178,168 + CSW01_00950 0.54 +0.6
178,168 + CSW01_00950 0.54 -0.1
178,168 + CSW01_00950 0.54 -2.0
178,168 + CSW01_00950 0.54 -0.0
178,174 + CSW01_00950 0.55 +0.6
178,176 - CSW01_00950 0.56 -1.8
178,176 - CSW01_00950 0.56 +0.2
178,176 - CSW01_00950 0.56 +0.8
178,176 - CSW01_00950 0.56 +1.9
178,176 - CSW01_00950 0.56 +0.2
178,199 - CSW01_00950 0.60 +3.0
178,201 + CSW01_00950 0.60 +0.5
178,209 + CSW01_00950 0.62 +0.1
178,211 - CSW01_00950 0.62 -1.2
178,303 - CSW01_00950 0.78 +0.4
178,328 + CSW01_00950 0.83 +0.1
178,329 + CSW01_00950 0.83 -0.1
178,329 + CSW01_00950 0.83 +0.2
178,330 + CSW01_00950 0.83 -0.2
178,338 - CSW01_00950 0.84 -0.6
178,338 - CSW01_00950 0.84 -0.2
178,338 - CSW01_00950 0.84 +0.0
178,356 + CSW01_00950 0.88 +0.7
178,389 + -0.2
178,523 + -0.3
178,530 + +0.2
178,538 + -0.3
178,546 - -0.1
178,565 + -1.0
178,565 + +0.1
178,644 - +0.6
178,715 + +1.6
178,725 + +0.1
178,745 + -0.4
178,784 - -0.2
178,784 - -0.6
178,870 - CSW01_00955 0.11 -0.0
178,870 - CSW01_00955 0.11 +0.7
178,878 + CSW01_00955 0.14 +0.3
178,899 - CSW01_00955 0.23 -0.6
178,966 + CSW01_00955 0.50 -0.1
178,966 + CSW01_00955 0.50 +0.7
178,974 - CSW01_00955 0.53 +0.1
179,011 - CSW01_00955 0.68 -1.2
179,020 + CSW01_00955 0.71 -0.0
179,020 + CSW01_00955 0.71 -0.0
179,020 + CSW01_00955 0.71 +0.8
179,020 + CSW01_00955 0.71 -0.5
179,020 + CSW01_00955 0.71 -0.1
179,028 - CSW01_00955 0.75 +0.3
179,028 - CSW01_00955 0.75 -0.7
179,028 - CSW01_00955 0.75 -0.4
179,028 - CSW01_00955 0.75 +0.7
179,028 - CSW01_00955 0.75 +0.0
179,055 + CSW01_00955 0.86 +0.3
179,055 + CSW01_00955 0.86 +0.4
179,097 + +0.0
179,097 + -0.4
179,148 - -0.9
179,201 + +0.1
179,229 + -0.8
179,229 + -0.2
179,229 + -0.2
179,230 + +0.4
179,230 + +0.0
179,237 - -0.2
179,237 - +0.4
179,237 - +0.4
179,237 - +0.0
179,241 + +0.7
179,250 - -0.4
179,251 + -0.2
179,251 + -0.1
179,251 + +0.3
179,251 + +0.3
179,270 - -1.4
179,312 - +0.7
179,314 - +0.1
179,355 + -0.1
179,358 + +0.2
179,422 - +0.1

Or see this region's nucleotide sequence