Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00745

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00735 and CSW01_00740 overlap by 4 nucleotidesCSW01_00740 and CSW01_00745 are separated by 203 nucleotidesCSW01_00745 and CSW01_00750 are separated by 48 nucleotidesCSW01_00750 and CSW01_00755 overlap by 11 nucleotides CSW01_00735: CSW01_00735 - DUF1145 domain-containing protein, at 135,889 to 136,155 _00735 CSW01_00740: CSW01_00740 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 136,152 to 136,751 _00740 CSW01_00745: CSW01_00745 - signal recognition particle-docking protein FtsY, at 136,955 to 138,130 _00745 CSW01_00750: CSW01_00750 - cell division ATP-binding protein FtsE, at 138,179 to 138,853 _00750 CSW01_00755: CSW01_00755 - cell division protein FtsX, at 138,843 to 139,835 _00755 Position (kb) 136 137 138 139Strain fitness (log2 ratio) -3 -2 -1 0 1at 136.016 kb on - strand, within CSW01_00735at 136.096 kb on - strand, within CSW01_00735at 136.144 kb on - strandat 136.144 kb on - strandat 136.144 kb on - strandat 136.149 kb on - strandat 136.171 kb on - strandat 136.262 kb on + strand, within CSW01_00740at 136.264 kb on + strand, within CSW01_00740at 136.264 kb on + strand, within CSW01_00740at 136.270 kb on - strand, within CSW01_00740at 136.272 kb on - strand, within CSW01_00740at 136.310 kb on + strand, within CSW01_00740at 136.365 kb on + strand, within CSW01_00740at 136.365 kb on + strand, within CSW01_00740at 136.365 kb on + strand, within CSW01_00740at 136.365 kb on + strand, within CSW01_00740at 136.372 kb on + strand, within CSW01_00740at 136.372 kb on + strand, within CSW01_00740at 136.373 kb on - strand, within CSW01_00740at 136.443 kb on + strand, within CSW01_00740at 136.443 kb on + strand, within CSW01_00740at 136.451 kb on - strand, within CSW01_00740at 136.451 kb on - strand, within CSW01_00740at 136.451 kb on - strand, within CSW01_00740at 136.453 kb on + strand, within CSW01_00740at 136.463 kb on + strand, within CSW01_00740at 136.463 kb on + strand, within CSW01_00740at 136.463 kb on + strand, within CSW01_00740at 136.463 kb on + strand, within CSW01_00740at 136.463 kb on + strand, within CSW01_00740at 136.471 kb on - strand, within CSW01_00740at 136.471 kb on - strand, within CSW01_00740at 136.471 kb on - strand, within CSW01_00740at 136.492 kb on - strand, within CSW01_00740at 136.506 kb on + strand, within CSW01_00740at 136.519 kb on - strand, within CSW01_00740at 136.524 kb on + strand, within CSW01_00740at 136.524 kb on + strand, within CSW01_00740at 136.524 kb on + strand, within CSW01_00740at 136.524 kb on + strand, within CSW01_00740at 136.530 kb on + strand, within CSW01_00740at 136.532 kb on - strand, within CSW01_00740at 136.532 kb on - strand, within CSW01_00740at 136.532 kb on - strand, within CSW01_00740at 136.532 kb on - strand, within CSW01_00740at 136.645 kb on - strand, within CSW01_00740at 136.647 kb on - strand, within CSW01_00740at 136.689 kb on - strand, within CSW01_00740at 136.692 kb on - strandat 136.744 kb on - strandat 136.774 kb on + strandat 136.782 kb on - strandat 138.140 kb on + strandat 138.152 kb on + strandat 138.152 kb on + strandat 138.160 kb on - strandat 138.196 kb on + strandat 138.207 kb on - strandat 138.235 kb on - strandat 138.271 kb on - strand, within CSW01_00750at 138.304 kb on - strand, within CSW01_00750at 138.403 kb on - strand, within CSW01_00750at 138.589 kb on + strand, within CSW01_00750at 138.597 kb on - strand, within CSW01_00750at 138.610 kb on - strand, within CSW01_00750at 138.632 kb on + strand, within CSW01_00750at 138.632 kb on + strand, within CSW01_00750at 138.632 kb on + strand, within CSW01_00750at 138.640 kb on + strand, within CSW01_00750at 138.640 kb on - strand, within CSW01_00750at 138.640 kb on - strand, within CSW01_00750at 138.640 kb on - strand, within CSW01_00750at 138.640 kb on - strand, within CSW01_00750at 138.640 kb on - strand, within CSW01_00750at 138.650 kb on - strand, within CSW01_00750at 138.656 kb on - strand, within CSW01_00750at 138.679 kb on + strand, within CSW01_00750at 138.687 kb on - strand, within CSW01_00750at 138.687 kb on - strand, within CSW01_00750at 138.704 kb on + strand, within CSW01_00750at 138.707 kb on - strand, within CSW01_00750at 138.722 kb on - strand, within CSW01_00750at 138.724 kb on + strand, within CSW01_00750at 138.732 kb on - strand, within CSW01_00750at 138.747 kb on - strand, within CSW01_00750at 138.747 kb on - strand, within CSW01_00750at 138.967 kb on - strand, within CSW01_00755at 139.032 kb on - strand, within CSW01_00755at 139.058 kb on - strand, within CSW01_00755at 139.058 kb on - strand, within CSW01_00755at 139.112 kb on + strand, within CSW01_00755at 139.112 kb on + strand, within CSW01_00755at 139.117 kb on + strand, within CSW01_00755at 139.117 kb on + strand, within CSW01_00755at 139.120 kb on - strand, within CSW01_00755at 139.120 kb on - strand, within CSW01_00755at 139.125 kb on - strand, within CSW01_00755at 139.125 kb on - strand, within CSW01_00755at 139.125 kb on - strand, within CSW01_00755

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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136,016 - CSW01_00735 0.48 +0.4
136,096 - CSW01_00735 0.78 -1.2
136,144 - +1.3
136,144 - -0.6
136,144 - -1.1
136,149 - -0.2
136,171 - -0.4
136,262 + CSW01_00740 0.18 +0.1
136,264 + CSW01_00740 0.19 +0.3
136,264 + CSW01_00740 0.19 +1.5
136,270 - CSW01_00740 0.20 -2.9
136,272 - CSW01_00740 0.20 +1.3
136,310 + CSW01_00740 0.26 +0.2
136,365 + CSW01_00740 0.35 +0.5
136,365 + CSW01_00740 0.35 -0.6
136,365 + CSW01_00740 0.35 -0.0
136,365 + CSW01_00740 0.35 +0.4
136,372 + CSW01_00740 0.37 +0.2
136,372 + CSW01_00740 0.37 -1.5
136,373 - CSW01_00740 0.37 +0.6
136,443 + CSW01_00740 0.48 +0.3
136,443 + CSW01_00740 0.48 +0.8
136,451 - CSW01_00740 0.50 +1.3
136,451 - CSW01_00740 0.50 +0.5
136,451 - CSW01_00740 0.50 -0.9
136,453 + CSW01_00740 0.50 +0.5
136,463 + CSW01_00740 0.52 -0.5
136,463 + CSW01_00740 0.52 -0.3
136,463 + CSW01_00740 0.52 +0.7
136,463 + CSW01_00740 0.52 +0.3
136,463 + CSW01_00740 0.52 -0.1
136,471 - CSW01_00740 0.53 +1.0
136,471 - CSW01_00740 0.53 +0.5
136,471 - CSW01_00740 0.53 +0.4
136,492 - CSW01_00740 0.57 -0.4
136,506 + CSW01_00740 0.59 -0.2
136,519 - CSW01_00740 0.61 +1.4
136,524 + CSW01_00740 0.62 +0.2
136,524 + CSW01_00740 0.62 -0.1
136,524 + CSW01_00740 0.62 +0.6
136,524 + CSW01_00740 0.62 +0.7
136,530 + CSW01_00740 0.63 -0.4
136,532 - CSW01_00740 0.63 -0.3
136,532 - CSW01_00740 0.63 +1.2
136,532 - CSW01_00740 0.63 +0.3
136,532 - CSW01_00740 0.63 +0.6
136,645 - CSW01_00740 0.82 -1.4
136,647 - CSW01_00740 0.82 +0.4
136,689 - CSW01_00740 0.90 +0.0
136,692 - -0.4
136,744 - -1.0
136,774 + -0.4
136,782 - +0.5
138,140 + +0.0
138,152 + +0.8
138,152 + -1.8
138,160 - -0.5
138,196 + -0.3
138,207 - -0.6
138,235 - +0.1
138,271 - CSW01_00750 0.14 -0.6
138,304 - CSW01_00750 0.19 -2.1
138,403 - CSW01_00750 0.33 +1.7
138,589 + CSW01_00750 0.61 -0.5
138,597 - CSW01_00750 0.62 -0.4
138,610 - CSW01_00750 0.64 -0.2
138,632 + CSW01_00750 0.67 +0.2
138,632 + CSW01_00750 0.67 +1.6
138,632 + CSW01_00750 0.67 -0.7
138,640 + CSW01_00750 0.68 +0.5
138,640 - CSW01_00750 0.68 +0.1
138,640 - CSW01_00750 0.68 -0.1
138,640 - CSW01_00750 0.68 +0.8
138,640 - CSW01_00750 0.68 -0.8
138,640 - CSW01_00750 0.68 +0.1
138,650 - CSW01_00750 0.70 +0.4
138,656 - CSW01_00750 0.71 -0.1
138,679 + CSW01_00750 0.74 +0.4
138,687 - CSW01_00750 0.75 -0.9
138,687 - CSW01_00750 0.75 -2.1
138,704 + CSW01_00750 0.78 -1.0
138,707 - CSW01_00750 0.78 +0.2
138,722 - CSW01_00750 0.80 -1.5
138,724 + CSW01_00750 0.81 +0.7
138,732 - CSW01_00750 0.82 -0.2
138,747 - CSW01_00750 0.84 -0.1
138,747 - CSW01_00750 0.84 +0.2
138,967 - CSW01_00755 0.12 -3.6
139,032 - CSW01_00755 0.19 -0.5
139,058 - CSW01_00755 0.22 +0.2
139,058 - CSW01_00755 0.22 -0.6
139,112 + CSW01_00755 0.27 +0.1
139,112 + CSW01_00755 0.27 -0.1
139,117 + CSW01_00755 0.28 +0.7
139,117 + CSW01_00755 0.28 -0.2
139,120 - CSW01_00755 0.28 +1.2
139,120 - CSW01_00755 0.28 +0.2
139,125 - CSW01_00755 0.28 +0.4
139,125 - CSW01_00755 0.28 +0.3
139,125 - CSW01_00755 0.28 +0.2

Or see this region's nucleotide sequence