Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00590

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00580 and CSW01_00585 are separated by 6 nucleotidesCSW01_00585 and CSW01_00590 are separated by 138 nucleotidesCSW01_00590 and CSW01_00595 are separated by 63 nucleotides CSW01_00580: CSW01_00580 - GTPase-activating protein, at 108,921 to 109,469 _00580 CSW01_00585: CSW01_00585 - DUF2489 domain-containing protein, at 109,476 to 109,967 _00585 CSW01_00590: CSW01_00590 - oxygen-independent coproporphyrinogen III oxidase, at 110,106 to 111,494 _00590 CSW01_00595: CSW01_00595 - heme biosynthesis protein HemY, at 111,558 to 112,754 _00595 Position (kb) 110 111 112Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 109.238 kb on - strand, within CSW01_00580at 109.274 kb on + strand, within CSW01_00580at 109.340 kb on + strand, within CSW01_00580at 109.361 kb on + strand, within CSW01_00580at 109.427 kb on + strandat 109.463 kb on + strandat 109.471 kb on - strandat 109.486 kb on + strandat 109.491 kb on + strandat 109.496 kb on + strandat 109.496 kb on + strandat 109.498 kb on - strandat 109.534 kb on + strand, within CSW01_00585at 109.598 kb on - strand, within CSW01_00585at 109.613 kb on + strand, within CSW01_00585at 109.621 kb on - strand, within CSW01_00585at 109.628 kb on + strand, within CSW01_00585at 109.716 kb on - strand, within CSW01_00585at 109.725 kb on - strand, within CSW01_00585at 109.763 kb on - strand, within CSW01_00585at 109.765 kb on - strand, within CSW01_00585at 109.778 kb on + strand, within CSW01_00585at 109.862 kb on + strand, within CSW01_00585at 109.862 kb on + strand, within CSW01_00585at 109.877 kb on - strand, within CSW01_00585at 109.912 kb on + strand, within CSW01_00585at 109.962 kb on + strandat 109.962 kb on + strandat 109.970 kb on - strandat 109.970 kb on - strandat 109.970 kb on - strandat 109.970 kb on - strandat 109.970 kb on - strandat 109.974 kb on + strandat 110.032 kb on - strandat 110.118 kb on + strandat 110.144 kb on + strandat 110.145 kb on + strandat 110.153 kb on - strandat 110.191 kb on + strandat 110.191 kb on + strandat 110.191 kb on - strandat 110.231 kb on - strandat 110.244 kb on + strandat 110.249 kb on + strand, within CSW01_00590at 110.249 kb on + strand, within CSW01_00590at 110.249 kb on + strand, within CSW01_00590at 110.257 kb on - strand, within CSW01_00590at 110.257 kb on - strand, within CSW01_00590at 110.257 kb on - strand, within CSW01_00590at 110.262 kb on - strand, within CSW01_00590at 110.295 kb on - strand, within CSW01_00590at 110.313 kb on - strand, within CSW01_00590at 110.374 kb on + strand, within CSW01_00590at 110.382 kb on - strand, within CSW01_00590at 110.382 kb on - strand, within CSW01_00590at 110.460 kb on + strand, within CSW01_00590at 110.469 kb on + strand, within CSW01_00590at 110.481 kb on + strand, within CSW01_00590at 110.481 kb on + strand, within CSW01_00590at 110.489 kb on - strand, within CSW01_00590at 110.489 kb on - strand, within CSW01_00590at 110.575 kb on + strand, within CSW01_00590at 110.575 kb on + strand, within CSW01_00590at 110.575 kb on + strand, within CSW01_00590at 110.575 kb on + strand, within CSW01_00590at 110.582 kb on - strand, within CSW01_00590at 110.607 kb on + strand, within CSW01_00590at 110.607 kb on + strand, within CSW01_00590at 110.607 kb on + strand, within CSW01_00590at 110.607 kb on + strand, within CSW01_00590at 110.607 kb on + strand, within CSW01_00590at 110.615 kb on - strand, within CSW01_00590at 110.615 kb on - strand, within CSW01_00590at 110.615 kb on - strand, within CSW01_00590at 110.615 kb on - strand, within CSW01_00590at 110.616 kb on - strand, within CSW01_00590at 110.623 kb on + strand, within CSW01_00590at 110.650 kb on - strand, within CSW01_00590at 110.660 kb on - strand, within CSW01_00590at 110.663 kb on + strand, within CSW01_00590at 110.663 kb on + strand, within CSW01_00590at 110.671 kb on - strand, within CSW01_00590at 110.702 kb on + strand, within CSW01_00590at 110.710 kb on - strand, within CSW01_00590at 110.740 kb on + strand, within CSW01_00590at 110.748 kb on - strand, within CSW01_00590at 110.756 kb on + strand, within CSW01_00590at 110.764 kb on - strand, within CSW01_00590at 110.790 kb on - strand, within CSW01_00590at 110.790 kb on - strand, within CSW01_00590at 110.827 kb on - strand, within CSW01_00590at 110.835 kb on + strand, within CSW01_00590at 110.854 kb on + strand, within CSW01_00590at 110.884 kb on - strand, within CSW01_00590at 110.961 kb on + strand, within CSW01_00590at 110.969 kb on + strand, within CSW01_00590at 110.985 kb on - strand, within CSW01_00590at 111.013 kb on + strand, within CSW01_00590at 111.023 kb on + strand, within CSW01_00590at 111.023 kb on + strand, within CSW01_00590at 111.023 kb on + strand, within CSW01_00590at 111.028 kb on + strand, within CSW01_00590at 111.028 kb on + strand, within CSW01_00590at 111.028 kb on + strand, within CSW01_00590at 111.031 kb on - strand, within CSW01_00590at 111.031 kb on - strand, within CSW01_00590at 111.031 kb on - strand, within CSW01_00590at 111.036 kb on - strand, within CSW01_00590at 111.088 kb on + strand, within CSW01_00590at 111.129 kb on + strand, within CSW01_00590at 111.167 kb on + strand, within CSW01_00590at 111.167 kb on + strand, within CSW01_00590at 111.180 kb on + strand, within CSW01_00590at 111.209 kb on + strand, within CSW01_00590at 111.229 kb on + strand, within CSW01_00590at 111.292 kb on + strand, within CSW01_00590at 111.292 kb on + strand, within CSW01_00590at 111.300 kb on - strand, within CSW01_00590at 111.300 kb on - strand, within CSW01_00590at 111.300 kb on - strand, within CSW01_00590at 111.300 kb on - strand, within CSW01_00590at 111.300 kb on - strand, within CSW01_00590at 111.327 kb on + strand, within CSW01_00590at 111.338 kb on + strand, within CSW01_00590at 111.338 kb on + strand, within CSW01_00590at 111.347 kb on - strand, within CSW01_00590at 111.436 kb on - strandat 111.497 kb on - strandat 111.530 kb on + strandat 111.574 kb on + strandat 111.592 kb on - strandat 111.671 kb on - strandat 111.677 kb on + strandat 111.685 kb on - strand, within CSW01_00595at 111.724 kb on + strand, within CSW01_00595at 111.724 kb on + strand, within CSW01_00595at 111.743 kb on + strand, within CSW01_00595at 111.768 kb on - strand, within CSW01_00595at 111.856 kb on + strand, within CSW01_00595at 111.864 kb on - strand, within CSW01_00595at 111.866 kb on + strand, within CSW01_00595at 111.866 kb on + strand, within CSW01_00595at 111.866 kb on + strand, within CSW01_00595at 111.866 kb on + strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.907 kb on + strand, within CSW01_00595at 111.913 kb on + strand, within CSW01_00595at 111.915 kb on + strand, within CSW01_00595at 111.925 kb on + strand, within CSW01_00595at 111.925 kb on + strand, within CSW01_00595at 112.000 kb on + strand, within CSW01_00595at 112.036 kb on - strand, within CSW01_00595at 112.088 kb on + strand, within CSW01_00595at 112.098 kb on + strand, within CSW01_00595at 112.119 kb on - strand, within CSW01_00595at 112.119 kb on - strand, within CSW01_00595at 112.134 kb on + strand, within CSW01_00595at 112.137 kb on + strand, within CSW01_00595at 112.138 kb on - strand, within CSW01_00595at 112.142 kb on - strand, within CSW01_00595at 112.171 kb on - strand, within CSW01_00595at 112.173 kb on - strand, within CSW01_00595at 112.193 kb on - strand, within CSW01_00595at 112.203 kb on - strand, within CSW01_00595at 112.220 kb on + strand, within CSW01_00595at 112.227 kb on + strand, within CSW01_00595at 112.250 kb on + strand, within CSW01_00595at 112.328 kb on + strand, within CSW01_00595at 112.336 kb on - strand, within CSW01_00595at 112.336 kb on - strand, within CSW01_00595at 112.360 kb on + strand, within CSW01_00595at 112.401 kb on - strand, within CSW01_00595at 112.462 kb on + strand, within CSW01_00595at 112.470 kb on - strand, within CSW01_00595

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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109,238 - CSW01_00580 0.58 -0.4
109,274 + CSW01_00580 0.64 +0.9
109,340 + CSW01_00580 0.76 +0.0
109,361 + CSW01_00580 0.80 -1.2
109,427 + +0.7
109,463 + +0.8
109,471 - -0.0
109,486 + +1.1
109,491 + -0.0
109,496 + -0.3
109,496 + -1.0
109,498 - -3.7
109,534 + CSW01_00585 0.12 -0.4
109,598 - CSW01_00585 0.25 -1.2
109,613 + CSW01_00585 0.28 -0.7
109,621 - CSW01_00585 0.29 -0.5
109,628 + CSW01_00585 0.31 +0.0
109,716 - CSW01_00585 0.49 -0.5
109,725 - CSW01_00585 0.51 +1.5
109,763 - CSW01_00585 0.58 +0.5
109,765 - CSW01_00585 0.59 +0.3
109,778 + CSW01_00585 0.61 -3.1
109,862 + CSW01_00585 0.78 -1.4
109,862 + CSW01_00585 0.78 -1.0
109,877 - CSW01_00585 0.82 -0.0
109,912 + CSW01_00585 0.89 -0.2
109,962 + -0.5
109,962 + -0.0
109,970 - -0.1
109,970 - -0.0
109,970 - +0.0
109,970 - +0.4
109,970 - +0.2
109,974 + -0.4
110,032 - -0.5
110,118 + -2.1
110,144 + -1.4
110,145 + +1.1
110,153 - -2.9
110,191 + +0.3
110,191 + -0.7
110,191 - -2.8
110,231 - -2.1
110,244 + +0.7
110,249 + CSW01_00590 0.10 +0.3
110,249 + CSW01_00590 0.10 -1.9
110,249 + CSW01_00590 0.10 -2.4
110,257 - CSW01_00590 0.11 +0.8
110,257 - CSW01_00590 0.11 -1.8
110,257 - CSW01_00590 0.11 -2.1
110,262 - CSW01_00590 0.11 +0.0
110,295 - CSW01_00590 0.14 -0.0
110,313 - CSW01_00590 0.15 +1.6
110,374 + CSW01_00590 0.19 +1.2
110,382 - CSW01_00590 0.20 -3.5
110,382 - CSW01_00590 0.20 -3.1
110,460 + CSW01_00590 0.25 +0.3
110,469 + CSW01_00590 0.26 -1.0
110,481 + CSW01_00590 0.27 -0.9
110,481 + CSW01_00590 0.27 -0.8
110,489 - CSW01_00590 0.28 -0.1
110,489 - CSW01_00590 0.28 +0.3
110,575 + CSW01_00590 0.34 +0.4
110,575 + CSW01_00590 0.34 -3.0
110,575 + CSW01_00590 0.34 +0.4
110,575 + CSW01_00590 0.34 -0.5
110,582 - CSW01_00590 0.34 -0.6
110,607 + CSW01_00590 0.36 -1.6
110,607 + CSW01_00590 0.36 +0.6
110,607 + CSW01_00590 0.36 -0.4
110,607 + CSW01_00590 0.36 -0.9
110,607 + CSW01_00590 0.36 +0.3
110,615 - CSW01_00590 0.37 -0.4
110,615 - CSW01_00590 0.37 -0.1
110,615 - CSW01_00590 0.37 +0.4
110,615 - CSW01_00590 0.37 -0.4
110,616 - CSW01_00590 0.37 -1.0
110,623 + CSW01_00590 0.37 +1.0
110,650 - CSW01_00590 0.39 -1.1
110,660 - CSW01_00590 0.40 +1.0
110,663 + CSW01_00590 0.40 -0.7
110,663 + CSW01_00590 0.40 +1.0
110,671 - CSW01_00590 0.41 -1.0
110,702 + CSW01_00590 0.43 +1.1
110,710 - CSW01_00590 0.43 -0.9
110,740 + CSW01_00590 0.46 -1.0
110,748 - CSW01_00590 0.46 +0.4
110,756 + CSW01_00590 0.47 -0.7
110,764 - CSW01_00590 0.47 -0.8
110,790 - CSW01_00590 0.49 -0.4
110,790 - CSW01_00590 0.49 +0.2
110,827 - CSW01_00590 0.52 +0.1
110,835 + CSW01_00590 0.52 -0.3
110,854 + CSW01_00590 0.54 -0.5
110,884 - CSW01_00590 0.56 -1.2
110,961 + CSW01_00590 0.62 +1.0
110,969 + CSW01_00590 0.62 +0.8
110,985 - CSW01_00590 0.63 -1.0
111,013 + CSW01_00590 0.65 +0.5
111,023 + CSW01_00590 0.66 -0.4
111,023 + CSW01_00590 0.66 -0.5
111,023 + CSW01_00590 0.66 +0.2
111,028 + CSW01_00590 0.66 +0.7
111,028 + CSW01_00590 0.66 -0.5
111,028 + CSW01_00590 0.66 -0.3
111,031 - CSW01_00590 0.67 -0.9
111,031 - CSW01_00590 0.67 +0.6
111,031 - CSW01_00590 0.67 -0.3
111,036 - CSW01_00590 0.67 +1.5
111,088 + CSW01_00590 0.71 +0.1
111,129 + CSW01_00590 0.74 -0.1
111,167 + CSW01_00590 0.76 -1.7
111,167 + CSW01_00590 0.76 -0.3
111,180 + CSW01_00590 0.77 -0.4
111,209 + CSW01_00590 0.79 -0.7
111,229 + CSW01_00590 0.81 +0.1
111,292 + CSW01_00590 0.85 -0.5
111,292 + CSW01_00590 0.85 -0.1
111,300 - CSW01_00590 0.86 -0.1
111,300 - CSW01_00590 0.86 +0.3
111,300 - CSW01_00590 0.86 -0.2
111,300 - CSW01_00590 0.86 +0.1
111,300 - CSW01_00590 0.86 -1.1
111,327 + CSW01_00590 0.88 -1.5
111,338 + CSW01_00590 0.89 +0.7
111,338 + CSW01_00590 0.89 +0.6
111,347 - CSW01_00590 0.89 +0.6
111,436 - -1.6
111,497 - -1.5
111,530 + -2.5
111,574 + -0.2
111,592 - -0.7
111,671 - +0.7
111,677 + +0.8
111,685 - CSW01_00595 0.11 +0.7
111,724 + CSW01_00595 0.14 +0.5
111,724 + CSW01_00595 0.14 -2.3
111,743 + CSW01_00595 0.15 -0.8
111,768 - CSW01_00595 0.18 +2.6
111,856 + CSW01_00595 0.25 -4.2
111,864 - CSW01_00595 0.26 +0.6
111,866 + CSW01_00595 0.26 -2.1
111,866 + CSW01_00595 0.26 -0.0
111,866 + CSW01_00595 0.26 +0.5
111,866 + CSW01_00595 0.26 +0.0
111,874 - CSW01_00595 0.26 -0.0
111,874 - CSW01_00595 0.26 +0.0
111,874 - CSW01_00595 0.26 -0.5
111,874 - CSW01_00595 0.26 +0.2
111,874 - CSW01_00595 0.26 -0.6
111,874 - CSW01_00595 0.26 +0.6
111,874 - CSW01_00595 0.26 +0.4
111,874 - CSW01_00595 0.26 +0.2
111,907 + CSW01_00595 0.29 +1.5
111,913 + CSW01_00595 0.30 +2.9
111,915 + CSW01_00595 0.30 +0.3
111,925 + CSW01_00595 0.31 -0.2
111,925 + CSW01_00595 0.31 -0.2
112,000 + CSW01_00595 0.37 -0.3
112,036 - CSW01_00595 0.40 -1.4
112,088 + CSW01_00595 0.44 +1.3
112,098 + CSW01_00595 0.45 +2.8
112,119 - CSW01_00595 0.47 +0.2
112,119 - CSW01_00595 0.47 -0.0
112,134 + CSW01_00595 0.48 +1.0
112,137 + CSW01_00595 0.48 +0.3
112,138 - CSW01_00595 0.48 -0.4
112,142 - CSW01_00595 0.49 +1.0
112,171 - CSW01_00595 0.51 +0.8
112,173 - CSW01_00595 0.51 +0.6
112,193 - CSW01_00595 0.53 -1.1
112,203 - CSW01_00595 0.54 +0.8
112,220 + CSW01_00595 0.55 +0.5
112,227 + CSW01_00595 0.56 +0.7
112,250 + CSW01_00595 0.58 -0.3
112,328 + CSW01_00595 0.64 -0.1
112,336 - CSW01_00595 0.65 -0.5
112,336 - CSW01_00595 0.65 +0.2
112,360 + CSW01_00595 0.67 +0.2
112,401 - CSW01_00595 0.70 -0.5
112,462 + CSW01_00595 0.76 -0.3
112,470 - CSW01_00595 0.76 +0.3

Or see this region's nucleotide sequence