Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01480

Experiment: Methyl beta-D-glucopyranoside (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS01470 and CA265_RS01475 are separated by 172 nucleotidesCA265_RS01475 and CA265_RS01480 are separated by 69 nucleotidesCA265_RS01480 and CA265_RS01485 overlap by 16 nucleotides CA265_RS01470: CA265_RS01470 - tRNA-Ser, at 373,649 to 373,736 _RS01470 CA265_RS01475: CA265_RS01475 - DoxX family protein, at 373,909 to 374,355 _RS01475 CA265_RS01480: CA265_RS01480 - two-component system response regulator, at 374,425 to 375,249 _RS01480 CA265_RS01485: CA265_RS01485 - hypothetical protein, at 375,234 to 378,374 _RS01485 Position (kb) 374 375 376Strain fitness (log2 ratio) -2 -1 0 1 2at 373.440 kb on + strandat 373.445 kb on + strandat 373.445 kb on + strandat 373.446 kb on - strandat 373.530 kb on + strandat 373.531 kb on - strandat 373.531 kb on - strandat 373.588 kb on - strandat 373.588 kb on - strandat 373.597 kb on + strandat 373.623 kb on - strandat 373.623 kb on - strandat 373.623 kb on - strandat 373.623 kb on - strandat 373.805 kb on - strandat 373.868 kb on + strandat 373.946 kb on - strandat 373.993 kb on + strand, within CA265_RS01475at 373.997 kb on - strand, within CA265_RS01475at 374.050 kb on - strand, within CA265_RS01475at 374.089 kb on - strand, within CA265_RS01475at 374.101 kb on + strand, within CA265_RS01475at 374.124 kb on + strand, within CA265_RS01475at 374.125 kb on - strand, within CA265_RS01475at 374.131 kb on + strand, within CA265_RS01475at 374.145 kb on + strand, within CA265_RS01475at 374.145 kb on + strand, within CA265_RS01475at 374.146 kb on - strand, within CA265_RS01475at 374.149 kb on + strand, within CA265_RS01475at 374.150 kb on - strand, within CA265_RS01475at 374.150 kb on - strand, within CA265_RS01475at 374.157 kb on + strand, within CA265_RS01475at 374.179 kb on + strand, within CA265_RS01475at 374.224 kb on - strand, within CA265_RS01475at 374.272 kb on - strand, within CA265_RS01475at 374.279 kb on - strand, within CA265_RS01475at 374.281 kb on + strand, within CA265_RS01475at 374.281 kb on + strand, within CA265_RS01475at 374.282 kb on - strand, within CA265_RS01475at 374.289 kb on + strand, within CA265_RS01475at 374.412 kb on + strandat 374.412 kb on + strandat 374.412 kb on + strandat 374.531 kb on - strand, within CA265_RS01480at 374.637 kb on + strand, within CA265_RS01480at 374.638 kb on - strand, within CA265_RS01480at 374.656 kb on + strand, within CA265_RS01480at 374.657 kb on - strand, within CA265_RS01480at 374.698 kb on + strand, within CA265_RS01480at 374.699 kb on - strand, within CA265_RS01480at 374.753 kb on - strand, within CA265_RS01480at 374.772 kb on + strand, within CA265_RS01480at 374.778 kb on - strand, within CA265_RS01480at 374.832 kb on + strand, within CA265_RS01480at 374.901 kb on - strand, within CA265_RS01480at 374.958 kb on + strand, within CA265_RS01480at 375.043 kb on + strand, within CA265_RS01480at 375.044 kb on - strand, within CA265_RS01480at 375.044 kb on - strand, within CA265_RS01480at 375.080 kb on - strand, within CA265_RS01480at 375.082 kb on + strand, within CA265_RS01480at 375.083 kb on - strand, within CA265_RS01480at 375.097 kb on + strand, within CA265_RS01480at 375.162 kb on + strand, within CA265_RS01480at 375.191 kb on - strandat 375.221 kb on - strandat 375.227 kb on + strandat 375.227 kb on + strandat 375.227 kb on + strandat 375.227 kb on + strandat 375.228 kb on - strandat 375.270 kb on + strandat 375.303 kb on + strandat 375.304 kb on - strandat 375.304 kb on - strandat 375.305 kb on + strandat 375.323 kb on + strandat 375.385 kb on - strandat 375.402 kb on + strandat 375.403 kb on - strandat 375.513 kb on + strandat 375.525 kb on - strandat 375.641 kb on + strand, within CA265_RS01485at 375.643 kb on + strand, within CA265_RS01485at 375.644 kb on - strand, within CA265_RS01485at 375.647 kb on + strand, within CA265_RS01485at 375.647 kb on + strand, within CA265_RS01485at 375.648 kb on - strand, within CA265_RS01485at 375.840 kb on + strand, within CA265_RS01485at 375.840 kb on + strand, within CA265_RS01485at 376.019 kb on - strand, within CA265_RS01485at 376.040 kb on + strand, within CA265_RS01485at 376.104 kb on + strand, within CA265_RS01485at 376.104 kb on + strand, within CA265_RS01485

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C)
remove
373,440 + +1.9
373,445 + -1.3
373,445 + -0.6
373,446 - -1.1
373,530 + -0.2
373,531 - +0.4
373,531 - +0.5
373,588 - -0.2
373,588 - +0.9
373,597 + -1.4
373,623 - +1.3
373,623 - -0.4
373,623 - -0.2
373,623 - +0.3
373,805 - -2.2
373,868 + -0.3
373,946 - -1.6
373,993 + CA265_RS01475 0.19 +0.2
373,997 - CA265_RS01475 0.20 -1.3
374,050 - CA265_RS01475 0.32 -1.7
374,089 - CA265_RS01475 0.40 -0.7
374,101 + CA265_RS01475 0.43 +1.0
374,124 + CA265_RS01475 0.48 -1.1
374,125 - CA265_RS01475 0.48 -0.5
374,131 + CA265_RS01475 0.50 +0.0
374,145 + CA265_RS01475 0.53 -1.6
374,145 + CA265_RS01475 0.53 +0.1
374,146 - CA265_RS01475 0.53 -1.1
374,149 + CA265_RS01475 0.54 +1.0
374,150 - CA265_RS01475 0.54 -0.6
374,150 - CA265_RS01475 0.54 -1.5
374,157 + CA265_RS01475 0.55 +0.2
374,179 + CA265_RS01475 0.60 +0.6
374,224 - CA265_RS01475 0.70 -2.1
374,272 - CA265_RS01475 0.81 -0.6
374,279 - CA265_RS01475 0.83 -0.9
374,281 + CA265_RS01475 0.83 -0.2
374,281 + CA265_RS01475 0.83 +0.0
374,282 - CA265_RS01475 0.83 -1.0
374,289 + CA265_RS01475 0.85 +0.9
374,412 + +0.3
374,412 + +0.5
374,412 + -0.7
374,531 - CA265_RS01480 0.13 -0.4
374,637 + CA265_RS01480 0.26 -0.8
374,638 - CA265_RS01480 0.26 -1.4
374,656 + CA265_RS01480 0.28 -1.4
374,657 - CA265_RS01480 0.28 -0.1
374,698 + CA265_RS01480 0.33 -0.5
374,699 - CA265_RS01480 0.33 -0.3
374,753 - CA265_RS01480 0.40 -0.2
374,772 + CA265_RS01480 0.42 +0.3
374,778 - CA265_RS01480 0.43 +0.3
374,832 + CA265_RS01480 0.49 -0.2
374,901 - CA265_RS01480 0.58 +0.4
374,958 + CA265_RS01480 0.65 +0.1
375,043 + CA265_RS01480 0.75 -0.4
375,044 - CA265_RS01480 0.75 -0.1
375,044 - CA265_RS01480 0.75 -0.4
375,080 - CA265_RS01480 0.79 +0.0
375,082 + CA265_RS01480 0.80 -0.2
375,083 - CA265_RS01480 0.80 -0.1
375,097 + CA265_RS01480 0.81 +0.5
375,162 + CA265_RS01480 0.89 -0.5
375,191 - +0.8
375,221 - +0.7
375,227 + +0.1
375,227 + -0.5
375,227 + -0.3
375,227 + -0.3
375,228 - -0.3
375,270 + +0.3
375,303 + -0.6
375,304 - -1.3
375,304 - -0.1
375,305 + -0.4
375,323 + -1.3
375,385 - +2.1
375,402 + +0.3
375,403 - +0.3
375,513 + -0.5
375,525 - -0.5
375,641 + CA265_RS01485 0.13 -0.2
375,643 + CA265_RS01485 0.13 -0.2
375,644 - CA265_RS01485 0.13 -0.4
375,647 + CA265_RS01485 0.13 -0.5
375,647 + CA265_RS01485 0.13 +0.2
375,648 - CA265_RS01485 0.13 -0.3
375,840 + CA265_RS01485 0.19 -0.0
375,840 + CA265_RS01485 0.19 -0.1
376,019 - CA265_RS01485 0.25 +0.8
376,040 + CA265_RS01485 0.26 -0.3
376,104 + CA265_RS01485 0.28 -0.4
376,104 + CA265_RS01485 0.28 -0.8

Or see this region's nucleotide sequence