Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23395 and BWI76_RS23400 are separated by 71 nucleotides BWI76_RS23400 and BWI76_RS23405 are separated by 322 nucleotides
BWI76_RS23395: BWI76_RS23395 - sugar ABC transporter substrate-binding protein, at 4,878,240 to 4,879,526
_RS23395
BWI76_RS23400: BWI76_RS23400 - oligogalacturonide lyase, at 4,879,598 to 4,880,725
_RS23400
BWI76_RS23405: BWI76_RS23405 - porin, at 4,881,048 to 4,882,391
_RS23405
Position (kb)
4879
4880
4881 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4878.637 kb on - strand, within BWI76_RS23395 at 4878.955 kb on - strand, within BWI76_RS23395 at 4878.959 kb on + strand, within BWI76_RS23395 at 4878.969 kb on - strand, within BWI76_RS23395 at 4879.015 kb on - strand, within BWI76_RS23395 at 4879.015 kb on - strand, within BWI76_RS23395 at 4879.100 kb on - strand, within BWI76_RS23395 at 4879.102 kb on + strand, within BWI76_RS23395 at 4879.123 kb on + strand, within BWI76_RS23395 at 4879.287 kb on + strand, within BWI76_RS23395 at 4879.428 kb on + strand at 4879.434 kb on - strand at 4879.583 kb on + strand at 4879.647 kb on - strand at 4879.816 kb on + strand, within BWI76_RS23400 at 4879.916 kb on + strand, within BWI76_RS23400 at 4879.938 kb on - strand, within BWI76_RS23400 at 4879.963 kb on + strand, within BWI76_RS23400 at 4880.063 kb on - strand, within BWI76_RS23400 at 4880.420 kb on - strand, within BWI76_RS23400 at 4880.573 kb on + strand, within BWI76_RS23400 at 4880.715 kb on - strand at 4880.748 kb on + strand at 4880.756 kb on - strand at 4880.756 kb on - strand at 4880.975 kb on + strand at 4881.010 kb on - strand at 4881.021 kb on - strand at 4881.203 kb on - strand, within BWI76_RS23405 at 4881.205 kb on + strand, within BWI76_RS23405 at 4881.247 kb on + strand, within BWI76_RS23405 at 4881.251 kb on - strand, within BWI76_RS23405 at 4881.282 kb on - strand, within BWI76_RS23405 at 4881.312 kb on + strand, within BWI76_RS23405 at 4881.315 kb on - strand, within BWI76_RS23405 at 4881.388 kb on + strand, within BWI76_RS23405 at 4881.673 kb on + strand, within BWI76_RS23405 at 4881.681 kb on - strand, within BWI76_RS23405 at 4881.688 kb on - strand, within BWI76_RS23405 at 4881.688 kb on - strand, within BWI76_RS23405 at 4881.711 kb on + strand, within BWI76_RS23405 at 4881.712 kb on + strand, within BWI76_RS23405
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 4,878,637 - BWI76_RS23395 0.31 +1.5 4,878,955 - BWI76_RS23395 0.56 -0.6 4,878,959 + BWI76_RS23395 0.56 -0.3 4,878,969 - BWI76_RS23395 0.57 +0.2 4,879,015 - BWI76_RS23395 0.60 -0.1 4,879,015 - BWI76_RS23395 0.60 +0.7 4,879,100 - BWI76_RS23395 0.67 -0.3 4,879,102 + BWI76_RS23395 0.67 +1.9 4,879,123 + BWI76_RS23395 0.69 +1.3 4,879,287 + BWI76_RS23395 0.81 -0.8 4,879,428 + +0.0 4,879,434 - +0.6 4,879,583 + +0.9 4,879,647 - +0.6 4,879,816 + BWI76_RS23400 0.19 -0.3 4,879,916 + BWI76_RS23400 0.28 +1.7 4,879,938 - BWI76_RS23400 0.30 -0.4 4,879,963 + BWI76_RS23400 0.32 +0.6 4,880,063 - BWI76_RS23400 0.41 -0.0 4,880,420 - BWI76_RS23400 0.73 +0.2 4,880,573 + BWI76_RS23400 0.86 +1.1 4,880,715 - -0.2 4,880,748 + +0.6 4,880,756 - -0.5 4,880,756 - +0.0 4,880,975 + +0.3 4,881,010 - +2.9 4,881,021 - +1.2 4,881,203 - BWI76_RS23405 0.12 -1.3 4,881,205 + BWI76_RS23405 0.12 -0.4 4,881,247 + BWI76_RS23405 0.15 -1.6 4,881,251 - BWI76_RS23405 0.15 -0.3 4,881,282 - BWI76_RS23405 0.17 +0.2 4,881,312 + BWI76_RS23405 0.20 -0.3 4,881,315 - BWI76_RS23405 0.20 -1.0 4,881,388 + BWI76_RS23405 0.25 +0.2 4,881,673 + BWI76_RS23405 0.47 +0.3 4,881,681 - BWI76_RS23405 0.47 -1.6 4,881,688 - BWI76_RS23405 0.48 +0.7 4,881,688 - BWI76_RS23405 0.48 -2.0 4,881,711 + BWI76_RS23405 0.49 -0.3 4,881,712 + BWI76_RS23405 0.49 +0.0
Or see this region's nucleotide sequence