Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18585

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18575 and BWI76_RS18580 are separated by 4 nucleotidesBWI76_RS18580 and BWI76_RS18585 are separated by 383 nucleotidesBWI76_RS18585 and BWI76_RS18590 overlap by 1 nucleotidesBWI76_RS18590 and BWI76_RS18595 are separated by 139 nucleotides BWI76_RS18575: BWI76_RS18575 - transcriptional regulator, at 3,853,441 to 3,853,743 _RS18575 BWI76_RS18580: BWI76_RS18580 - hypothetical protein, at 3,853,748 to 3,854,101 _RS18580 BWI76_RS18585: BWI76_RS18585 - two-component sensor histidine kinase, at 3,854,485 to 3,855,903 _RS18585 BWI76_RS18590: BWI76_RS18590 - DNA-binding response regulator, at 3,855,903 to 3,856,571 _RS18590 BWI76_RS18595: BWI76_RS18595 - hypothetical protein, at 3,856,711 to 3,857,337 _RS18595 Position (kb) 3854 3855 3856Strain fitness (log2 ratio) -2 -1 0 1 2at 3853.515 kb on - strand, within BWI76_RS18575at 3853.655 kb on - strand, within BWI76_RS18575at 3853.776 kb on - strandat 3853.805 kb on + strand, within BWI76_RS18580at 3854.056 kb on + strand, within BWI76_RS18580at 3854.308 kb on - strandat 3854.358 kb on + strandat 3854.490 kb on - strandat 3854.619 kb on + strandat 3854.831 kb on + strand, within BWI76_RS18585at 3854.831 kb on + strand, within BWI76_RS18585at 3854.839 kb on - strand, within BWI76_RS18585at 3854.839 kb on - strand, within BWI76_RS18585at 3854.850 kb on - strand, within BWI76_RS18585at 3854.925 kb on - strand, within BWI76_RS18585at 3854.934 kb on + strand, within BWI76_RS18585at 3854.952 kb on - strand, within BWI76_RS18585at 3855.054 kb on + strand, within BWI76_RS18585at 3855.083 kb on + strand, within BWI76_RS18585at 3855.337 kb on - strand, within BWI76_RS18585at 3855.490 kb on + strand, within BWI76_RS18585at 3855.499 kb on + strand, within BWI76_RS18585at 3855.516 kb on - strandat 3855.758 kb on - strand, within BWI76_RS18585at 3855.948 kb on - strandat 3856.161 kb on - strand, within BWI76_RS18590at 3856.271 kb on - strand, within BWI76_RS18590at 3856.325 kb on - strand, within BWI76_RS18590at 3856.412 kb on + strand, within BWI76_RS18590at 3856.420 kb on - strand, within BWI76_RS18590at 3856.516 kb on - strandat 3856.517 kb on - strandat 3856.608 kb on - strandat 3856.655 kb on + strandat 3856.663 kb on - strandat 3856.663 kb on - strandat 3856.778 kb on - strand, within BWI76_RS18595at 3856.823 kb on - strand, within BWI76_RS18595

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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3,853,515 - BWI76_RS18575 0.24 +0.3
3,853,655 - BWI76_RS18575 0.71 +0.1
3,853,776 - -0.5
3,853,805 + BWI76_RS18580 0.16 +0.6
3,854,056 + BWI76_RS18580 0.87 +1.1
3,854,308 - -0.1
3,854,358 + +0.4
3,854,490 - +0.2
3,854,619 + -0.3
3,854,831 + BWI76_RS18585 0.24 +1.8
3,854,831 + BWI76_RS18585 0.24 +0.7
3,854,839 - BWI76_RS18585 0.25 +0.2
3,854,839 - BWI76_RS18585 0.25 +1.0
3,854,850 - BWI76_RS18585 0.26 +2.5
3,854,925 - BWI76_RS18585 0.31 -0.1
3,854,934 + BWI76_RS18585 0.32 +0.8
3,854,952 - BWI76_RS18585 0.33 +1.5
3,855,054 + BWI76_RS18585 0.40 -0.4
3,855,083 + BWI76_RS18585 0.42 -1.0
3,855,337 - BWI76_RS18585 0.60 -2.2
3,855,490 + BWI76_RS18585 0.71 +1.6
3,855,499 + BWI76_RS18585 0.71 +1.6
3,855,516 - +1.1
3,855,758 - BWI76_RS18585 0.90 -0.2
3,855,948 - -0.2
3,856,161 - BWI76_RS18590 0.39 -0.3
3,856,271 - BWI76_RS18590 0.55 -1.3
3,856,325 - BWI76_RS18590 0.63 -1.0
3,856,412 + BWI76_RS18590 0.76 -0.9
3,856,420 - BWI76_RS18590 0.77 +0.2
3,856,516 - +0.2
3,856,517 - -0.4
3,856,608 - +1.9
3,856,655 + -0.0
3,856,663 - -0.6
3,856,663 - -0.2
3,856,778 - BWI76_RS18595 0.11 -0.1
3,856,823 - BWI76_RS18595 0.18 +0.0

Or see this region's nucleotide sequence