Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18195

Experiment: Gly-Glu (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS18185 and BWI76_RS18190 are separated by 39 nucleotidesBWI76_RS18190 and BWI76_RS18195 overlap by 4 nucleotidesBWI76_RS18195 and BWI76_RS18200 are separated by 100 nucleotidesBWI76_RS18200 and BWI76_RS18205 are separated by 76 nucleotides BWI76_RS18185: BWI76_RS18185 - membrane protein, at 3,778,386 to 3,778,781 _RS18185 BWI76_RS18190: BWI76_RS18190 - carboxy-S-adenosyl-L-methionine synthase CmoA, at 3,778,821 to 3,779,564 _RS18190 BWI76_RS18195: BWI76_RS18195 - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 3,779,561 to 3,780,577 _RS18195 BWI76_RS18200: BWI76_RS18200 - copper homeostasis protein CutC, at 3,780,678 to 3,781,412 _RS18200 BWI76_RS18205: BWI76_RS18205 - VOC family protein, at 3,781,489 to 3,782,058 _RS18205 Position (kb) 3779 3780 3781Strain fitness (log2 ratio) -1 0 1 2 3 4at 3778.603 kb on - strand, within BWI76_RS18185at 3778.605 kb on + strand, within BWI76_RS18185at 3778.649 kb on + strand, within BWI76_RS18185at 3778.744 kb on + strandat 3778.752 kb on - strandat 3779.110 kb on - strand, within BWI76_RS18190at 3779.150 kb on + strand, within BWI76_RS18190at 3779.775 kb on + strand, within BWI76_RS18195at 3779.814 kb on + strand, within BWI76_RS18195at 3780.107 kb on - strand, within BWI76_RS18195at 3780.317 kb on - strand, within BWI76_RS18195at 3780.878 kb on + strand, within BWI76_RS18200at 3780.878 kb on + strand, within BWI76_RS18200at 3780.886 kb on - strand, within BWI76_RS18200at 3780.886 kb on - strand, within BWI76_RS18200at 3780.886 kb on - strand, within BWI76_RS18200at 3780.886 kb on - strand, within BWI76_RS18200at 3780.886 kb on - strand, within BWI76_RS18200at 3780.886 kb on - strand, within BWI76_RS18200at 3781.070 kb on - strand, within BWI76_RS18200at 3781.327 kb on + strand, within BWI76_RS18200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
remove
3,778,603 - BWI76_RS18185 0.55 +0.2
3,778,605 + BWI76_RS18185 0.55 -0.7
3,778,649 + BWI76_RS18185 0.66 -0.5
3,778,744 + +1.6
3,778,752 - -1.6
3,779,110 - BWI76_RS18190 0.39 +0.5
3,779,150 + BWI76_RS18190 0.44 -0.5
3,779,775 + BWI76_RS18195 0.21 +2.8
3,779,814 + BWI76_RS18195 0.25 -1.2
3,780,107 - BWI76_RS18195 0.54 +4.7
3,780,317 - BWI76_RS18195 0.74 -0.4
3,780,878 + BWI76_RS18200 0.27 +3.6
3,780,878 + BWI76_RS18200 0.27 +0.6
3,780,886 - BWI76_RS18200 0.28 -0.8
3,780,886 - BWI76_RS18200 0.28 -1.1
3,780,886 - BWI76_RS18200 0.28 -0.6
3,780,886 - BWI76_RS18200 0.28 -1.0
3,780,886 - BWI76_RS18200 0.28 +0.0
3,780,886 - BWI76_RS18200 0.28 +0.3
3,781,070 - BWI76_RS18200 0.53 +0.1
3,781,327 + BWI76_RS18200 0.88 -0.5

Or see this region's nucleotide sequence