Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17600

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17590 and BWI76_RS17595 are separated by 226 nucleotidesBWI76_RS17595 and BWI76_RS17600 are separated by 96 nucleotidesBWI76_RS17600 and BWI76_RS17605 are separated by 228 nucleotides BWI76_RS17590: BWI76_RS17590 - 5-hydroxyisourate hydrolase, at 3,654,789 to 3,655,199 _RS17590 BWI76_RS17595: BWI76_RS17595 - hypothetical protein, at 3,655,426 to 3,655,953 _RS17595 BWI76_RS17600: BWI76_RS17600 - hypothetical protein, at 3,656,050 to 3,656,535 _RS17600 BWI76_RS17605: BWI76_RS17605 - phosphoenolpyruvate carboxykinase (ATP), at 3,656,764 to 3,658,404 _RS17605 Position (kb) 3656 3657Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 3655.062 kb on + strand, within BWI76_RS17590at 3655.076 kb on - strand, within BWI76_RS17590at 3655.086 kb on - strand, within BWI76_RS17590at 3655.086 kb on - strand, within BWI76_RS17590at 3655.086 kb on - strand, within BWI76_RS17590at 3655.086 kb on - strand, within BWI76_RS17590at 3655.100 kb on + strand, within BWI76_RS17590at 3655.100 kb on + strand, within BWI76_RS17590at 3655.100 kb on + strand, within BWI76_RS17590at 3655.100 kb on + strand, within BWI76_RS17590at 3655.108 kb on - strand, within BWI76_RS17590at 3655.108 kb on - strand, within BWI76_RS17590at 3655.131 kb on - strand, within BWI76_RS17590at 3655.131 kb on - strand, within BWI76_RS17590at 3655.151 kb on + strand, within BWI76_RS17590at 3655.233 kb on - strandat 3655.239 kb on + strandat 3655.239 kb on + strandat 3655.285 kb on + strandat 3655.316 kb on + strandat 3655.316 kb on + strandat 3655.324 kb on + strandat 3655.324 kb on - strandat 3655.324 kb on - strandat 3655.353 kb on + strandat 3655.353 kb on + strandat 3655.360 kb on + strandat 3655.385 kb on + strandat 3655.431 kb on + strandat 3655.431 kb on + strandat 3655.431 kb on + strandat 3655.431 kb on + strandat 3655.431 kb on + strandat 3655.431 kb on + strandat 3655.431 kb on + strandat 3655.431 kb on + strandat 3655.433 kb on - strandat 3655.439 kb on - strandat 3655.439 kb on - strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.441 kb on + strandat 3655.443 kb on + strandat 3655.446 kb on + strandat 3655.449 kb on - strandat 3655.449 kb on - strandat 3655.449 kb on - strandat 3655.449 kb on - strandat 3655.449 kb on - strandat 3655.449 kb on - strandat 3655.449 kb on - strandat 3655.463 kb on + strandat 3655.463 kb on + strandat 3655.463 kb on + strandat 3655.463 kb on + strandat 3655.471 kb on - strandat 3655.487 kb on + strand, within BWI76_RS17595at 3655.487 kb on + strand, within BWI76_RS17595at 3655.487 kb on + strand, within BWI76_RS17595at 3655.487 kb on + strand, within BWI76_RS17595at 3655.487 kb on + strand, within BWI76_RS17595at 3655.495 kb on - strand, within BWI76_RS17595at 3655.495 kb on - strand, within BWI76_RS17595at 3655.495 kb on - strand, within BWI76_RS17595at 3655.497 kb on + strand, within BWI76_RS17595at 3655.497 kb on + strand, within BWI76_RS17595at 3655.497 kb on + strandat 3655.497 kb on + strand, within BWI76_RS17595at 3655.497 kb on + strand, within BWI76_RS17595at 3655.497 kb on + strand, within BWI76_RS17595at 3655.497 kb on + strand, within BWI76_RS17595at 3655.497 kb on + strand, within BWI76_RS17595at 3655.497 kb on + strand, within BWI76_RS17595at 3655.497 kb on + strand, within BWI76_RS17595at 3655.497 kb on + strand, within BWI76_RS17595at 3655.497 kb on + strand, within BWI76_RS17595at 3655.505 kb on - strand, within BWI76_RS17595at 3655.505 kb on - strand, within BWI76_RS17595at 3655.505 kb on - strand, within BWI76_RS17595at 3655.505 kb on - strand, within BWI76_RS17595at 3655.505 kb on - strand, within BWI76_RS17595at 3655.505 kb on - strand, within BWI76_RS17595at 3655.505 kb on - strand, within BWI76_RS17595at 3655.505 kb on - strand, within BWI76_RS17595at 3655.505 kb on - strand, within BWI76_RS17595at 3655.505 kb on - strand, within BWI76_RS17595at 3655.601 kb on + strand, within BWI76_RS17595at 3655.724 kb on + strand, within BWI76_RS17595at 3655.769 kb on + strand, within BWI76_RS17595at 3655.828 kb on - strand, within BWI76_RS17595at 3655.880 kb on + strand, within BWI76_RS17595at 3655.880 kb on + strand, within BWI76_RS17595at 3655.887 kb on - strand, within BWI76_RS17595at 3655.892 kb on - strand, within BWI76_RS17595at 3655.943 kb on + strandat 3655.951 kb on - strandat 3655.955 kb on + strandat 3656.084 kb on - strandat 3656.226 kb on + strand, within BWI76_RS17600at 3656.234 kb on + strand, within BWI76_RS17600at 3656.234 kb on + strand, within BWI76_RS17600at 3656.234 kb on - strand, within BWI76_RS17600at 3656.234 kb on - strand, within BWI76_RS17600at 3656.234 kb on - strand, within BWI76_RS17600at 3656.239 kb on + strand, within BWI76_RS17600at 3656.240 kb on + strand, within BWI76_RS17600at 3656.240 kb on + strand, within BWI76_RS17600at 3656.242 kb on - strand, within BWI76_RS17600at 3656.246 kb on + strand, within BWI76_RS17600at 3656.247 kb on - strand, within BWI76_RS17600at 3656.248 kb on - strand, within BWI76_RS17600at 3656.293 kb on - strand, within BWI76_RS17600at 3656.305 kb on + strand, within BWI76_RS17600at 3656.315 kb on - strand, within BWI76_RS17600at 3656.322 kb on - strand, within BWI76_RS17600at 3656.323 kb on - strand, within BWI76_RS17600at 3656.328 kb on - strand, within BWI76_RS17600at 3656.334 kb on - strand, within BWI76_RS17600at 3656.393 kb on + strand, within BWI76_RS17600at 3656.431 kb on + strand, within BWI76_RS17600at 3656.431 kb on + strand, within BWI76_RS17600at 3656.438 kb on + strand, within BWI76_RS17600at 3656.439 kb on - strand, within BWI76_RS17600at 3656.439 kb on - strand, within BWI76_RS17600at 3656.439 kb on - strand, within BWI76_RS17600at 3656.439 kb on - strand, within BWI76_RS17600at 3656.439 kb on - strand, within BWI76_RS17600at 3656.439 kb on - strand, within BWI76_RS17600at 3656.448 kb on + strand, within BWI76_RS17600at 3656.469 kb on + strand, within BWI76_RS17600at 3656.499 kb on + strandat 3656.509 kb on - strandat 3656.522 kb on - strandat 3656.522 kb on - strandat 3656.522 kb on - strandat 3656.571 kb on + strandat 3656.577 kb on - strandat 3656.582 kb on - strandat 3656.587 kb on + strandat 3656.587 kb on + strandat 3656.587 kb on + strandat 3656.587 kb on + strandat 3656.594 kb on - strandat 3656.594 kb on - strandat 3656.595 kb on - strandat 3656.595 kb on - strandat 3656.596 kb on + strandat 3656.604 kb on - strandat 3656.604 kb on - strandat 3656.606 kb on + strandat 3656.640 kb on + strandat 3656.642 kb on + strandat 3656.648 kb on - strandat 3656.675 kb on + strandat 3656.686 kb on + strandat 3656.686 kb on + strandat 3656.692 kb on - strandat 3656.692 kb on - strandat 3656.698 kb on + strandat 3656.698 kb on + strandat 3656.745 kb on - strandat 3656.780 kb on + strandat 3656.800 kb on + strandat 3656.849 kb on - strandat 3656.929 kb on - strand, within BWI76_RS17605at 3657.054 kb on + strand, within BWI76_RS17605at 3657.062 kb on - strand, within BWI76_RS17605at 3657.086 kb on + strand, within BWI76_RS17605at 3657.094 kb on - strand, within BWI76_RS17605at 3657.094 kb on - strand, within BWI76_RS17605at 3657.218 kb on - strand, within BWI76_RS17605at 3657.218 kb on - strand, within BWI76_RS17605at 3657.339 kb on + strand, within BWI76_RS17605at 3657.458 kb on + strand, within BWI76_RS17605at 3657.459 kb on - strand, within BWI76_RS17605at 3657.466 kb on - strand, within BWI76_RS17605

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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3,655,062 + BWI76_RS17590 0.66 -1.1
3,655,076 - BWI76_RS17590 0.70 -0.7
3,655,086 - BWI76_RS17590 0.72 -0.6
3,655,086 - BWI76_RS17590 0.72 +0.5
3,655,086 - BWI76_RS17590 0.72 +1.6
3,655,086 - BWI76_RS17590 0.72 +0.1
3,655,100 + BWI76_RS17590 0.76 -0.9
3,655,100 + BWI76_RS17590 0.76 -0.3
3,655,100 + BWI76_RS17590 0.76 -0.9
3,655,100 + BWI76_RS17590 0.76 -0.3
3,655,108 - BWI76_RS17590 0.78 +0.2
3,655,108 - BWI76_RS17590 0.78 -0.5
3,655,131 - BWI76_RS17590 0.83 +0.6
3,655,131 - BWI76_RS17590 0.83 +0.0
3,655,151 + BWI76_RS17590 0.88 -0.4
3,655,233 - -0.1
3,655,239 + +0.5
3,655,239 + +1.4
3,655,285 + -0.6
3,655,316 + -1.2
3,655,316 + -0.4
3,655,324 + +6.0
3,655,324 - -0.2
3,655,324 - -0.4
3,655,353 + -0.1
3,655,353 + +1.0
3,655,360 + -0.0
3,655,385 + +1.0
3,655,431 + -0.7
3,655,431 + +0.8
3,655,431 + -1.7
3,655,431 + +1.5
3,655,431 + -0.1
3,655,431 + +1.8
3,655,431 + +0.3
3,655,431 + +0.6
3,655,433 - -1.2
3,655,439 - +1.6
3,655,439 - -0.4
3,655,441 + -0.1
3,655,441 + +0.3
3,655,441 + +1.0
3,655,441 + -1.0
3,655,441 + -1.1
3,655,441 + -0.1
3,655,441 + +0.1
3,655,441 + +0.8
3,655,441 + -0.3
3,655,441 + +0.8
3,655,441 + -0.5
3,655,441 + +0.7
3,655,441 + -0.7
3,655,441 + -0.5
3,655,441 + -1.0
3,655,441 + -0.9
3,655,441 + -0.5
3,655,441 + +1.0
3,655,441 + +1.6
3,655,441 + -0.9
3,655,441 + -0.6
3,655,441 + +2.8
3,655,441 + -1.0
3,655,441 + +1.2
3,655,441 + -0.2
3,655,443 + -0.2
3,655,446 + -0.3
3,655,449 - -1.2
3,655,449 - -0.4
3,655,449 - +0.0
3,655,449 - +2.0
3,655,449 - -0.7
3,655,449 - +0.2
3,655,449 - -0.2
3,655,463 + -0.3
3,655,463 + -0.7
3,655,463 + -0.1
3,655,463 + -0.9
3,655,471 - -0.9
3,655,487 + BWI76_RS17595 0.12 -0.4
3,655,487 + BWI76_RS17595 0.12 +3.6
3,655,487 + BWI76_RS17595 0.12 -0.3
3,655,487 + BWI76_RS17595 0.12 +3.4
3,655,487 + BWI76_RS17595 0.12 +1.2
3,655,495 - BWI76_RS17595 0.13 +3.4
3,655,495 - BWI76_RS17595 0.13 -0.9
3,655,495 - BWI76_RS17595 0.13 -0.1
3,655,497 + BWI76_RS17595 0.13 +0.3
3,655,497 + BWI76_RS17595 0.13 -0.6
3,655,497 + +0.0
3,655,497 + BWI76_RS17595 0.13 +1.0
3,655,497 + BWI76_RS17595 0.13 +0.3
3,655,497 + BWI76_RS17595 0.13 -0.8
3,655,497 + BWI76_RS17595 0.13 +0.4
3,655,497 + BWI76_RS17595 0.13 +0.5
3,655,497 + BWI76_RS17595 0.13 +0.8
3,655,497 + BWI76_RS17595 0.13 +0.5
3,655,497 + BWI76_RS17595 0.13 +0.8
3,655,497 + BWI76_RS17595 0.13 +1.3
3,655,505 - BWI76_RS17595 0.15 -0.1
3,655,505 - BWI76_RS17595 0.15 +0.8
3,655,505 - BWI76_RS17595 0.15 +0.4
3,655,505 - BWI76_RS17595 0.15 -0.6
3,655,505 - BWI76_RS17595 0.15 -0.2
3,655,505 - BWI76_RS17595 0.15 -1.2
3,655,505 - BWI76_RS17595 0.15 -0.9
3,655,505 - BWI76_RS17595 0.15 +0.0
3,655,505 - BWI76_RS17595 0.15 -0.9
3,655,505 - BWI76_RS17595 0.15 -1.6
3,655,601 + BWI76_RS17595 0.33 +0.0
3,655,724 + BWI76_RS17595 0.56 -0.4
3,655,769 + BWI76_RS17595 0.65 -0.4
3,655,828 - BWI76_RS17595 0.76 -1.0
3,655,880 + BWI76_RS17595 0.86 +0.5
3,655,880 + BWI76_RS17595 0.86 -1.0
3,655,887 - BWI76_RS17595 0.87 -0.3
3,655,892 - BWI76_RS17595 0.88 -0.1
3,655,943 + -0.7
3,655,951 - -3.5
3,655,955 + -0.5
3,656,084 - -0.6
3,656,226 + BWI76_RS17600 0.36 +0.6
3,656,234 + BWI76_RS17600 0.38 +4.3
3,656,234 + BWI76_RS17600 0.38 +0.0
3,656,234 - BWI76_RS17600 0.38 +0.4
3,656,234 - BWI76_RS17600 0.38 -0.0
3,656,234 - BWI76_RS17600 0.38 +0.9
3,656,239 + BWI76_RS17600 0.39 +0.0
3,656,240 + BWI76_RS17600 0.39 -0.5
3,656,240 + BWI76_RS17600 0.39 -0.1
3,656,242 - BWI76_RS17600 0.40 -0.1
3,656,246 + BWI76_RS17600 0.40 -2.0
3,656,247 - BWI76_RS17600 0.41 -0.5
3,656,248 - BWI76_RS17600 0.41 -0.1
3,656,293 - BWI76_RS17600 0.50 +2.0
3,656,305 + BWI76_RS17600 0.52 -0.7
3,656,315 - BWI76_RS17600 0.55 +0.9
3,656,322 - BWI76_RS17600 0.56 +1.3
3,656,323 - BWI76_RS17600 0.56 +0.1
3,656,328 - BWI76_RS17600 0.57 +1.3
3,656,334 - BWI76_RS17600 0.58 -1.1
3,656,393 + BWI76_RS17600 0.71 -0.1
3,656,431 + BWI76_RS17600 0.78 +1.0
3,656,431 + BWI76_RS17600 0.78 +0.1
3,656,438 + BWI76_RS17600 0.80 +2.0
3,656,439 - BWI76_RS17600 0.80 -1.3
3,656,439 - BWI76_RS17600 0.80 -0.1
3,656,439 - BWI76_RS17600 0.80 -1.2
3,656,439 - BWI76_RS17600 0.80 -1.4
3,656,439 - BWI76_RS17600 0.80 -0.8
3,656,439 - BWI76_RS17600 0.80 +8.3
3,656,448 + BWI76_RS17600 0.82 -0.3
3,656,469 + BWI76_RS17600 0.86 +0.6
3,656,499 + +0.1
3,656,509 - +2.2
3,656,522 - -1.4
3,656,522 - -1.3
3,656,522 - -1.3
3,656,571 + +0.6
3,656,577 - +0.8
3,656,582 - -0.2
3,656,587 + -0.5
3,656,587 + +0.5
3,656,587 + -1.2
3,656,587 + -0.2
3,656,594 - +2.6
3,656,594 - -0.2
3,656,595 - -0.3
3,656,595 - +1.6
3,656,596 + -0.1
3,656,604 - -0.1
3,656,604 - +0.6
3,656,606 + -0.4
3,656,640 + +0.8
3,656,642 + -0.3
3,656,648 - -0.7
3,656,675 + +0.0
3,656,686 + -0.0
3,656,686 + -1.1
3,656,692 - +0.9
3,656,692 - +5.5
3,656,698 + +0.1
3,656,698 + +0.1
3,656,745 - -0.1
3,656,780 + -1.0
3,656,800 + +0.7
3,656,849 - -1.4
3,656,929 - BWI76_RS17605 0.10 +0.4
3,657,054 + BWI76_RS17605 0.18 -0.2
3,657,062 - BWI76_RS17605 0.18 -0.3
3,657,086 + BWI76_RS17605 0.20 +0.4
3,657,094 - BWI76_RS17605 0.20 -0.3
3,657,094 - BWI76_RS17605 0.20 +0.0
3,657,218 - BWI76_RS17605 0.28 -1.0
3,657,218 - BWI76_RS17605 0.28 -2.3
3,657,339 + BWI76_RS17605 0.35 +0.8
3,657,458 + BWI76_RS17605 0.42 -0.0
3,657,459 - BWI76_RS17605 0.42 +0.9
3,657,466 - BWI76_RS17605 0.43 -0.6

Or see this region's nucleotide sequence