Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17345 and BWI76_RS17350 are separated by 10 nucleotides BWI76_RS17350 and BWI76_RS17355 overlap by 4 nucleotides BWI76_RS17355 and BWI76_RS17360 are separated by 102 nucleotides
BWI76_RS17345: BWI76_RS17345 - nitrate/nitrite two-component system sensor histidine kinase NarX, at 3,594,148 to 3,595,926
_RS17345
BWI76_RS17350: BWI76_RS17350 - DNA-binding response regulator, at 3,595,937 to 3,596,587
_RS17350
BWI76_RS17355: BWI76_RS17355 - YchO family inverse autotransporter domain-containing protein, at 3,596,584 to 3,597,963
_RS17355
BWI76_RS17360: BWI76_RS17360 - nitrate reductase, at 3,598,066 to 3,600,666
_RS17360
Position (kb)
3596
3597
3598 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3595.701 kb on + strand, within BWI76_RS17345 at 3596.379 kb on + strand, within BWI76_RS17350 at 3596.476 kb on + strand, within BWI76_RS17350 at 3596.924 kb on - strand, within BWI76_RS17355 at 3597.047 kb on - strand, within BWI76_RS17355 at 3597.338 kb on - strand, within BWI76_RS17355 at 3597.382 kb on - strand, within BWI76_RS17355 at 3597.444 kb on - strand, within BWI76_RS17355 at 3597.522 kb on + strand, within BWI76_RS17355 at 3597.537 kb on + strand, within BWI76_RS17355 at 3597.545 kb on - strand, within BWI76_RS17355 at 3597.858 kb on - strand at 3597.879 kb on - strand at 3598.128 kb on - strand at 3598.212 kb on + strand at 3598.911 kb on + strand, within BWI76_RS17360
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 3,595,701 + BWI76_RS17345 0.87 -1.2 3,596,379 + BWI76_RS17350 0.68 +1.5 3,596,476 + BWI76_RS17350 0.83 +0.1 3,596,924 - BWI76_RS17355 0.25 +0.7 3,597,047 - BWI76_RS17355 0.34 +0.5 3,597,338 - BWI76_RS17355 0.55 -0.4 3,597,382 - BWI76_RS17355 0.58 -0.6 3,597,444 - BWI76_RS17355 0.62 -1.7 3,597,522 + BWI76_RS17355 0.68 -0.2 3,597,537 + BWI76_RS17355 0.69 +4.3 3,597,545 - BWI76_RS17355 0.70 -0.7 3,597,858 - -1.6 3,597,879 - -0.0 3,598,128 - -2.3 3,598,212 + -0.1 3,598,911 + BWI76_RS17360 0.32 -0.4
Or see this region's nucleotide sequence