Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16505

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16495 and BWI76_RS16500 are separated by 121 nucleotidesBWI76_RS16500 and BWI76_RS16505 are separated by 56 nucleotidesBWI76_RS16505 and BWI76_RS16510 are separated by 551 nucleotides BWI76_RS16495: BWI76_RS16495 - endopeptidase, at 3,419,170 to 3,420,024 _RS16495 BWI76_RS16500: BWI76_RS16500 - superoxide dismutase [Fe], at 3,420,146 to 3,420,727 _RS16500 BWI76_RS16505: BWI76_RS16505 - MFS transporter, at 3,420,784 to 3,421,950 _RS16505 BWI76_RS16510: BWI76_RS16510 - transcriptional repressor PurR, at 3,422,502 to 3,423,527 _RS16510 Position (kb) 3420 3421 3422Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3420.343 kb on - strand, within BWI76_RS16500at 3420.666 kb on + strand, within BWI76_RS16500at 3421.197 kb on + strand, within BWI76_RS16505at 3421.322 kb on + strand, within BWI76_RS16505at 3421.330 kb on - strand, within BWI76_RS16505at 3421.330 kb on - strand, within BWI76_RS16505at 3421.570 kb on - strand, within BWI76_RS16505at 3421.632 kb on + strand, within BWI76_RS16505at 3421.640 kb on - strand, within BWI76_RS16505at 3422.104 kb on - strandat 3422.139 kb on - strandat 3422.385 kb on + strandat 3422.404 kb on + strandat 3422.509 kb on + strandat 3422.765 kb on + strand, within BWI76_RS16510at 3422.766 kb on + strand, within BWI76_RS16510at 3422.766 kb on + strand, within BWI76_RS16510

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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3,420,343 - BWI76_RS16500 0.34 -0.3
3,420,666 + BWI76_RS16500 0.89 -0.4
3,421,197 + BWI76_RS16505 0.35 -0.3
3,421,322 + BWI76_RS16505 0.46 +5.5
3,421,330 - BWI76_RS16505 0.47 -0.3
3,421,330 - BWI76_RS16505 0.47 -0.7
3,421,570 - BWI76_RS16505 0.67 -0.5
3,421,632 + BWI76_RS16505 0.73 -0.7
3,421,640 - BWI76_RS16505 0.73 -0.3
3,422,104 - +0.0
3,422,139 - -0.6
3,422,385 + +0.5
3,422,404 + -0.9
3,422,509 + +0.1
3,422,765 + BWI76_RS16510 0.26 -0.6
3,422,766 + BWI76_RS16510 0.26 +0.9
3,422,766 + BWI76_RS16510 0.26 -0.7

Or see this region's nucleotide sequence