Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16495

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16485 and BWI76_RS16490 are separated by 51 nucleotidesBWI76_RS16490 and BWI76_RS16495 are separated by 339 nucleotidesBWI76_RS16495 and BWI76_RS16500 are separated by 121 nucleotidesBWI76_RS16500 and BWI76_RS16505 are separated by 56 nucleotides BWI76_RS16485: BWI76_RS16485 - ribonuclease T, at 3,417,787 to 3,418,431 _RS16485 BWI76_RS16490: BWI76_RS16490 - glutaredoxin, at 3,418,483 to 3,418,830 _RS16490 BWI76_RS16495: BWI76_RS16495 - endopeptidase, at 3,419,170 to 3,420,024 _RS16495 BWI76_RS16500: BWI76_RS16500 - superoxide dismutase [Fe], at 3,420,146 to 3,420,727 _RS16500 BWI76_RS16505: BWI76_RS16505 - MFS transporter, at 3,420,784 to 3,421,950 _RS16505 Position (kb) 3419 3420 3421Strain fitness (log2 ratio) -1 0 1 2at 3418.251 kb on - strand, within BWI76_RS16485at 3418.312 kb on + strand, within BWI76_RS16485at 3418.612 kb on - strand, within BWI76_RS16490at 3419.134 kb on + strandat 3419.134 kb on + strandat 3419.306 kb on - strand, within BWI76_RS16495at 3419.538 kb on + strand, within BWI76_RS16495at 3419.748 kb on + strand, within BWI76_RS16495at 3420.343 kb on - strand, within BWI76_RS16500at 3420.666 kb on + strand, within BWI76_RS16500

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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3,418,251 - BWI76_RS16485 0.72 +0.0
3,418,312 + BWI76_RS16485 0.81 +2.4
3,418,612 - BWI76_RS16490 0.37 +0.0
3,419,134 + -0.7
3,419,134 + -0.7
3,419,306 - BWI76_RS16495 0.16 +1.6
3,419,538 + BWI76_RS16495 0.43 +1.4
3,419,748 + BWI76_RS16495 0.68 +0.6
3,420,343 - BWI76_RS16500 0.34 -0.3
3,420,666 + BWI76_RS16500 0.89 -0.4

Or see this region's nucleotide sequence