Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16390

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16385 and BWI76_RS16390 are separated by 596 nucleotidesBWI76_RS16390 and BWI76_RS16395 are separated by 108 nucleotidesBWI76_RS16395 and BWI76_RS16400 are separated by 47 nucleotides BWI76_RS16385: BWI76_RS16385 - endonuclease III, at 3,399,202 to 3,399,837 _RS16385 BWI76_RS16390: BWI76_RS16390 - dipeptide/tripeptide permease A, at 3,400,434 to 3,401,939 _RS16390 BWI76_RS16395: BWI76_RS16395 - glutathione S-transferase, at 3,402,048 to 3,402,653 _RS16395 BWI76_RS16400: BWI76_RS16400 - pyridoxal kinase, at 3,402,701 to 3,403,561 _RS16400 Position (kb) 3400 3401 3402Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 3399.711 kb on + strand, within BWI76_RS16385at 3400.267 kb on - strandat 3400.308 kb on - strandat 3400.448 kb on + strandat 3400.488 kb on - strandat 3400.817 kb on + strand, within BWI76_RS16390at 3400.817 kb on + strand, within BWI76_RS16390at 3400.825 kb on - strand, within BWI76_RS16390at 3401.195 kb on + strand, within BWI76_RS16390at 3401.301 kb on + strand, within BWI76_RS16390at 3401.391 kb on - strand, within BWI76_RS16390at 3402.033 kb on + strandat 3402.111 kb on + strand, within BWI76_RS16395at 3402.119 kb on - strand, within BWI76_RS16395at 3402.407 kb on + strand, within BWI76_RS16395at 3402.565 kb on - strand, within BWI76_RS16395at 3402.727 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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3,399,711 + BWI76_RS16385 0.80 -1.2
3,400,267 - +7.2
3,400,308 - -0.3
3,400,448 + -0.8
3,400,488 - -2.7
3,400,817 + BWI76_RS16390 0.25 +2.6
3,400,817 + BWI76_RS16390 0.25 -1.5
3,400,825 - BWI76_RS16390 0.26 -2.2
3,401,195 + BWI76_RS16390 0.51 -1.1
3,401,301 + BWI76_RS16390 0.58 -0.3
3,401,391 - BWI76_RS16390 0.64 -2.0
3,402,033 + -0.3
3,402,111 + BWI76_RS16395 0.10 +0.8
3,402,119 - BWI76_RS16395 0.12 +3.5
3,402,407 + BWI76_RS16395 0.59 -0.6
3,402,565 - BWI76_RS16395 0.85 +0.7
3,402,727 + -0.0

Or see this region's nucleotide sequence