Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15050

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15040 and BWI76_RS15045 are separated by 92 nucleotidesBWI76_RS15045 and BWI76_RS15050 overlap by 18 nucleotidesBWI76_RS15050 and BWI76_RS15055 are separated by 194 nucleotides BWI76_RS15040: BWI76_RS15040 - putative 2-nitropropane dioxygenase, at 3,147,935 to 3,148,981 _RS15040 BWI76_RS15045: BWI76_RS15045 - LysR family transcriptional regulator, at 3,149,074 to 3,149,910 _RS15045 BWI76_RS15050: BWI76_RS15050 - sugar transporter, at 3,149,893 to 3,151,080 _RS15050 BWI76_RS15055: BWI76_RS15055 - lysine transporter LysE, at 3,151,275 to 3,151,895 _RS15055 Position (kb) 3149 3150 3151 3152Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3149.322 kb on - strand, within BWI76_RS15045at 3149.332 kb on - strand, within BWI76_RS15045at 3149.625 kb on + strand, within BWI76_RS15045at 3149.848 kb on - strandat 3149.989 kb on - strandat 3150.125 kb on - strand, within BWI76_RS15050at 3150.239 kb on - strand, within BWI76_RS15050at 3150.461 kb on + strand, within BWI76_RS15050at 3151.182 kb on - strandat 3151.390 kb on + strand, within BWI76_RS15055at 3151.462 kb on + strand, within BWI76_RS15055at 3151.577 kb on - strand, within BWI76_RS15055at 3151.596 kb on + strand, within BWI76_RS15055at 3151.604 kb on - strand, within BWI76_RS15055at 3151.627 kb on - strand, within BWI76_RS15055at 3151.662 kb on - strand, within BWI76_RS15055at 3151.671 kb on - strand, within BWI76_RS15055at 3151.673 kb on + strand, within BWI76_RS15055at 3151.680 kb on + strand, within BWI76_RS15055at 3151.680 kb on + strand, within BWI76_RS15055at 3151.681 kb on - strand, within BWI76_RS15055at 3151.682 kb on - strand, within BWI76_RS15055at 3151.682 kb on - strand, within BWI76_RS15055at 3151.688 kb on - strand, within BWI76_RS15055at 3151.688 kb on - strand, within BWI76_RS15055at 3151.701 kb on - strand, within BWI76_RS15055at 3151.708 kb on - strand, within BWI76_RS15055at 3151.708 kb on - strand, within BWI76_RS15055at 3151.712 kb on + strand, within BWI76_RS15055at 3151.727 kb on - strand, within BWI76_RS15055at 3151.746 kb on + strandat 3151.761 kb on - strand, within BWI76_RS15055at 3151.822 kb on + strand, within BWI76_RS15055at 3151.843 kb on - strandat 3151.848 kb on - strandat 3151.871 kb on - strandat 3151.951 kb on + strandat 3151.951 kb on + strandat 3151.951 kb on + strandat 3151.951 kb on + strandat 3151.951 kb on + strandat 3151.959 kb on - strandat 3151.959 kb on - strandat 3151.959 kb on - strandat 3151.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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3,149,322 - BWI76_RS15045 0.30 +0.6
3,149,332 - BWI76_RS15045 0.31 +0.4
3,149,625 + BWI76_RS15045 0.66 -0.1
3,149,848 - +0.5
3,149,989 - -0.8
3,150,125 - BWI76_RS15050 0.20 -0.3
3,150,239 - BWI76_RS15050 0.29 +0.6
3,150,461 + BWI76_RS15050 0.48 +1.8
3,151,182 - -0.6
3,151,390 + BWI76_RS15055 0.19 +0.0
3,151,462 + BWI76_RS15055 0.30 -0.6
3,151,577 - BWI76_RS15055 0.49 -0.2
3,151,596 + BWI76_RS15055 0.52 +1.0
3,151,604 - BWI76_RS15055 0.53 +0.9
3,151,627 - BWI76_RS15055 0.57 +2.2
3,151,662 - BWI76_RS15055 0.62 -0.7
3,151,671 - BWI76_RS15055 0.64 +0.4
3,151,673 + BWI76_RS15055 0.64 -1.4
3,151,680 + BWI76_RS15055 0.65 +0.5
3,151,680 + BWI76_RS15055 0.65 -0.0
3,151,681 - BWI76_RS15055 0.65 +0.3
3,151,682 - BWI76_RS15055 0.66 -0.1
3,151,682 - BWI76_RS15055 0.66 -0.3
3,151,688 - BWI76_RS15055 0.67 -0.1
3,151,688 - BWI76_RS15055 0.67 +1.6
3,151,701 - BWI76_RS15055 0.69 -0.2
3,151,708 - BWI76_RS15055 0.70 -0.3
3,151,708 - BWI76_RS15055 0.70 -0.6
3,151,712 + BWI76_RS15055 0.70 -2.5
3,151,727 - BWI76_RS15055 0.73 +0.2
3,151,746 + +3.6
3,151,761 - BWI76_RS15055 0.78 -0.8
3,151,822 + BWI76_RS15055 0.88 -1.1
3,151,843 - -0.9
3,151,848 - -0.0
3,151,871 - +3.0
3,151,951 + +1.1
3,151,951 + +0.2
3,151,951 + +2.6
3,151,951 + -0.1
3,151,951 + +0.6
3,151,959 - -0.3
3,151,959 - -0.2
3,151,959 - -1.4
3,151,990 - +0.3

Or see this region's nucleotide sequence