Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14070 and BWI76_RS14075 are separated by 17 nucleotides BWI76_RS14075 and BWI76_RS14080 are separated by 11 nucleotides BWI76_RS14080 and BWI76_RS14085 are separated by 16 nucleotides BWI76_RS14085 and BWI76_RS14090 are separated by 123 nucleotides
BWI76_RS14070: BWI76_RS14070 - ECF subfamily RNA polymerase sigma-24 subunit, at 2,940,392 to 2,940,952
_RS14070
BWI76_RS14075: BWI76_RS14075 - TetR family transcriptional regulator, at 2,940,970 to 2,941,605
_RS14075
BWI76_RS14080: BWI76_RS14080 - hydrophobe/amphiphile efflux-1 family RND transporter, at 2,941,617 to 2,944,724
_RS14080
BWI76_RS14085: BWI76_RS14085 - hypothetical protein, at 2,944,741 to 2,945,163
_RS14085
BWI76_RS14090: BWI76_RS14090 - polyketide cyclase, at 2,945,287 to 2,945,740
_RS14090
Position (kb)
2941
2942
2943
2944
2945 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2940.760 kb on - strand, within BWI76_RS14070 at 2941.102 kb on + strand, within BWI76_RS14075 at 2941.246 kb on - strand, within BWI76_RS14075 at 2941.809 kb on + strand at 2942.107 kb on + strand, within BWI76_RS14080 at 2942.131 kb on + strand, within BWI76_RS14080 at 2942.308 kb on + strand, within BWI76_RS14080 at 2942.628 kb on - strand, within BWI76_RS14080 at 2942.628 kb on - strand, within BWI76_RS14080 at 2942.630 kb on + strand, within BWI76_RS14080 at 2942.708 kb on + strand, within BWI76_RS14080 at 2942.775 kb on + strand, within BWI76_RS14080 at 2943.219 kb on - strand, within BWI76_RS14080 at 2943.229 kb on - strand, within BWI76_RS14080 at 2943.444 kb on + strand, within BWI76_RS14080 at 2943.529 kb on + strand, within BWI76_RS14080 at 2944.011 kb on - strand, within BWI76_RS14080 at 2944.162 kb on - strand, within BWI76_RS14080 at 2944.337 kb on + strand, within BWI76_RS14080 at 2944.510 kb on + strand at 2944.734 kb on + strand at 2945.332 kb on + strand at 2945.407 kb on - strand, within BWI76_RS14090 at 2945.451 kb on - strand, within BWI76_RS14090 at 2945.573 kb on - strand, within BWI76_RS14090
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 2,940,760 - BWI76_RS14070 0.66 +0.4 2,941,102 + BWI76_RS14075 0.21 +0.6 2,941,246 - BWI76_RS14075 0.43 +0.5 2,941,809 + -1.0 2,942,107 + BWI76_RS14080 0.16 -0.3 2,942,131 + BWI76_RS14080 0.17 -0.4 2,942,308 + BWI76_RS14080 0.22 -1.4 2,942,628 - BWI76_RS14080 0.33 -0.6 2,942,628 - BWI76_RS14080 0.33 -1.1 2,942,630 + BWI76_RS14080 0.33 -1.3 2,942,708 + BWI76_RS14080 0.35 -2.1 2,942,775 + BWI76_RS14080 0.37 -1.5 2,943,219 - BWI76_RS14080 0.52 +0.6 2,943,229 - BWI76_RS14080 0.52 +2.3 2,943,444 + BWI76_RS14080 0.59 -0.7 2,943,529 + BWI76_RS14080 0.62 +4.2 2,944,011 - BWI76_RS14080 0.77 -1.4 2,944,162 - BWI76_RS14080 0.82 +0.4 2,944,337 + BWI76_RS14080 0.88 +3.8 2,944,510 + -0.1 2,944,734 + +0.2 2,945,332 + -0.1 2,945,407 - BWI76_RS14090 0.26 -0.0 2,945,451 - BWI76_RS14090 0.36 -0.2 2,945,573 - BWI76_RS14090 0.63 +0.2
Or see this region's nucleotide sequence