Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13345

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13340 and BWI76_RS13345 are separated by 138 nucleotidesBWI76_RS13345 and BWI76_RS13350 are separated by 88 nucleotides BWI76_RS13340: BWI76_RS13340 - peptide ABC transporter substrate-binding protein, at 2,781,998 to 2,783,590 _RS13340 BWI76_RS13345: BWI76_RS13345 - DUF3313 domain-containing protein, at 2,783,729 to 2,784,397 _RS13345 BWI76_RS13350: BWI76_RS13350 - EamA family transporter, at 2,784,486 to 2,785,394 _RS13350 Position (kb) 2783 2784 2785Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2782.731 kb on + strand, within BWI76_RS13340at 2782.819 kb on - strand, within BWI76_RS13340at 2782.839 kb on - strand, within BWI76_RS13340at 2782.899 kb on + strand, within BWI76_RS13340at 2782.899 kb on + strand, within BWI76_RS13340at 2782.899 kb on + strand, within BWI76_RS13340at 2782.907 kb on - strand, within BWI76_RS13340at 2782.907 kb on - strand, within BWI76_RS13340at 2782.907 kb on - strand, within BWI76_RS13340at 2783.003 kb on + strand, within BWI76_RS13340at 2783.064 kb on - strand, within BWI76_RS13340at 2783.160 kb on - strand, within BWI76_RS13340at 2783.160 kb on - strand, within BWI76_RS13340at 2783.222 kb on - strand, within BWI76_RS13340at 2783.222 kb on - strand, within BWI76_RS13340at 2783.249 kb on - strand, within BWI76_RS13340at 2783.272 kb on + strand, within BWI76_RS13340at 2783.284 kb on - strand, within BWI76_RS13340at 2783.349 kb on + strand, within BWI76_RS13340at 2783.349 kb on + strand, within BWI76_RS13340at 2783.349 kb on + strand, within BWI76_RS13340at 2783.437 kb on + strandat 2783.442 kb on + strandat 2783.450 kb on - strandat 2783.450 kb on - strandat 2783.458 kb on + strandat 2783.462 kb on + strandat 2783.462 kb on + strandat 2783.463 kb on + strandat 2783.470 kb on - strandat 2783.473 kb on + strandat 2783.473 kb on + strandat 2783.473 kb on + strandat 2783.473 kb on + strandat 2783.481 kb on - strandat 2783.481 kb on - strandat 2783.481 kb on - strandat 2783.527 kb on + strandat 2783.527 kb on + strandat 2783.528 kb on - strandat 2783.675 kb on - strandat 2783.686 kb on + strandat 2783.717 kb on + strandat 2783.723 kb on + strandat 2783.725 kb on - strandat 2783.877 kb on + strand, within BWI76_RS13345at 2783.877 kb on + strand, within BWI76_RS13345at 2783.877 kb on + strand, within BWI76_RS13345at 2783.885 kb on - strand, within BWI76_RS13345at 2783.887 kb on + strand, within BWI76_RS13345at 2783.949 kb on + strand, within BWI76_RS13345at 2783.949 kb on + strand, within BWI76_RS13345at 2783.957 kb on - strand, within BWI76_RS13345at 2783.973 kb on + strand, within BWI76_RS13345at 2783.974 kb on - strand, within BWI76_RS13345at 2784.018 kb on + strand, within BWI76_RS13345at 2784.082 kb on - strand, within BWI76_RS13345at 2784.298 kb on - strand, within BWI76_RS13345at 2784.569 kb on + strandat 2784.655 kb on + strand, within BWI76_RS13350at 2784.696 kb on + strand, within BWI76_RS13350at 2784.744 kb on + strand, within BWI76_RS13350at 2784.904 kb on - strand, within BWI76_RS13350at 2784.978 kb on + strand, within BWI76_RS13350at 2785.265 kb on + strand, within BWI76_RS13350at 2785.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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2,782,731 + BWI76_RS13340 0.46 +0.6
2,782,819 - BWI76_RS13340 0.52 +0.2
2,782,839 - BWI76_RS13340 0.53 +0.4
2,782,899 + BWI76_RS13340 0.57 +0.7
2,782,899 + BWI76_RS13340 0.57 +0.3
2,782,899 + BWI76_RS13340 0.57 +0.0
2,782,907 - BWI76_RS13340 0.57 -1.0
2,782,907 - BWI76_RS13340 0.57 -0.0
2,782,907 - BWI76_RS13340 0.57 +0.8
2,783,003 + BWI76_RS13340 0.63 -1.2
2,783,064 - BWI76_RS13340 0.67 +1.8
2,783,160 - BWI76_RS13340 0.73 -0.5
2,783,160 - BWI76_RS13340 0.73 -1.3
2,783,222 - BWI76_RS13340 0.77 -1.9
2,783,222 - BWI76_RS13340 0.77 -0.6
2,783,249 - BWI76_RS13340 0.79 +0.6
2,783,272 + BWI76_RS13340 0.80 +0.1
2,783,284 - BWI76_RS13340 0.81 +0.4
2,783,349 + BWI76_RS13340 0.85 +2.1
2,783,349 + BWI76_RS13340 0.85 -0.8
2,783,349 + BWI76_RS13340 0.85 +1.4
2,783,437 + +0.4
2,783,442 + -0.7
2,783,450 - -1.4
2,783,450 - -0.9
2,783,458 + -0.2
2,783,462 + -0.9
2,783,462 + +0.4
2,783,463 + -0.1
2,783,470 - -0.5
2,783,473 + -0.8
2,783,473 + +0.3
2,783,473 + +1.1
2,783,473 + -0.8
2,783,481 - -1.1
2,783,481 - +1.6
2,783,481 - +0.4
2,783,527 + -0.7
2,783,527 + +0.5
2,783,528 - -0.8
2,783,675 - -1.1
2,783,686 + -0.4
2,783,717 + -0.4
2,783,723 + +1.0
2,783,725 - -0.8
2,783,877 + BWI76_RS13345 0.22 +0.7
2,783,877 + BWI76_RS13345 0.22 +0.2
2,783,877 + BWI76_RS13345 0.22 +0.6
2,783,885 - BWI76_RS13345 0.23 +0.4
2,783,887 + BWI76_RS13345 0.24 +0.3
2,783,949 + BWI76_RS13345 0.33 +1.0
2,783,949 + BWI76_RS13345 0.33 +1.2
2,783,957 - BWI76_RS13345 0.34 -0.2
2,783,973 + BWI76_RS13345 0.36 +2.7
2,783,974 - BWI76_RS13345 0.37 +5.6
2,784,018 + BWI76_RS13345 0.43 +0.5
2,784,082 - BWI76_RS13345 0.53 -1.0
2,784,298 - BWI76_RS13345 0.85 +0.3
2,784,569 + -0.7
2,784,655 + BWI76_RS13350 0.19 -0.8
2,784,696 + BWI76_RS13350 0.23 -0.9
2,784,744 + BWI76_RS13350 0.28 +1.5
2,784,904 - BWI76_RS13350 0.46 -2.0
2,784,978 + BWI76_RS13350 0.54 +0.3
2,785,265 + BWI76_RS13350 0.86 +0.7
2,785,383 - +0.1

Or see this region's nucleotide sequence