Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11675

Experiment: Gly-Glu (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS11670 and BWI76_RS11675 overlap by 4 nucleotidesBWI76_RS11675 and BWI76_RS11680 overlap by 4 nucleotides BWI76_RS11670: BWI76_RS11670 - Succinylornithine transaminase (EC 2.6.1.81) (from data), at 2,454,861 to 2,456,081 _RS11670 BWI76_RS11675: BWI76_RS11675 - arginine N-succinyltransferase, at 2,456,078 to 2,457,112 _RS11675 BWI76_RS11680: BWI76_RS11680 - succinylglutamate-semialdehyde dehydrogenase, at 2,457,109 to 2,458,587 _RS11680 Position (kb) 2456 2457 2458Strain fitness (log2 ratio) -1 0 1 2at 2455.110 kb on - strand, within BWI76_RS11670at 2455.770 kb on + strand, within BWI76_RS11670at 2455.814 kb on + strand, within BWI76_RS11670at 2455.817 kb on - strand, within BWI76_RS11670at 2455.869 kb on - strand, within BWI76_RS11670at 2455.910 kb on + strand, within BWI76_RS11670at 2455.910 kb on + strand, within BWI76_RS11670at 2455.910 kb on + strand, within BWI76_RS11670at 2455.910 kb on + strand, within BWI76_RS11670at 2455.910 kb on + strand, within BWI76_RS11670at 2456.367 kb on + strand, within BWI76_RS11675at 2456.375 kb on + strand, within BWI76_RS11675at 2456.997 kb on - strand, within BWI76_RS11675at 2457.686 kb on + strand, within BWI76_RS11680at 2457.686 kb on + strand, within BWI76_RS11680at 2457.694 kb on - strand, within BWI76_RS11680

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
remove
2,455,110 - BWI76_RS11670 0.20 -0.4
2,455,770 + BWI76_RS11670 0.74 +0.4
2,455,814 + BWI76_RS11670 0.78 +1.7
2,455,817 - BWI76_RS11670 0.78 +0.6
2,455,869 - BWI76_RS11670 0.83 -0.5
2,455,910 + BWI76_RS11670 0.86 -0.8
2,455,910 + BWI76_RS11670 0.86 +0.0
2,455,910 + BWI76_RS11670 0.86 -0.6
2,455,910 + BWI76_RS11670 0.86 -0.2
2,455,910 + BWI76_RS11670 0.86 -0.5
2,456,367 + BWI76_RS11675 0.28 -0.3
2,456,375 + BWI76_RS11675 0.29 +2.0
2,456,997 - BWI76_RS11675 0.89 +1.9
2,457,686 + BWI76_RS11680 0.39 +0.8
2,457,686 + BWI76_RS11680 0.39 -0.7
2,457,694 - BWI76_RS11680 0.40 +0.6

Or see this region's nucleotide sequence