Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09405

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09395 and BWI76_RS09400 are separated by 76 nucleotidesBWI76_RS09400 and BWI76_RS09405 are separated by 305 nucleotidesBWI76_RS09405 and BWI76_RS09410 overlap by 38 nucleotidesBWI76_RS09410 and BWI76_RS09415 are separated by 74 nucleotides BWI76_RS09395: BWI76_RS09395 - late control gene D protein, at 1,970,770 to 1,971,855 _RS09395 BWI76_RS09400: BWI76_RS09400 - phage transcriptional activator, Ogr/delta, at 1,971,932 to 1,972,147 _RS09400 BWI76_RS09405: BWI76_RS09405 - hypothetical protein, at 1,972,453 to 1,972,632 _RS09405 BWI76_RS09410: BWI76_RS09410 - reverse transcriptase, at 1,972,595 to 1,973,191 _RS09410 BWI76_RS09415: BWI76_RS09415 - IS3 family transposase, at 1,973,266 to 1,974,377 _RS09415 Position (kb) 1972 1973Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 1971.574 kb on - strand, within BWI76_RS09395at 1971.617 kb on - strandat 1971.657 kb on + strand, within BWI76_RS09395at 1971.684 kb on + strand, within BWI76_RS09395at 1971.713 kb on - strand, within BWI76_RS09395at 1971.745 kb on - strand, within BWI76_RS09395at 1971.755 kb on - strandat 1971.791 kb on - strandat 1971.915 kb on + strandat 1972.037 kb on + strand, within BWI76_RS09400at 1972.070 kb on - strand, within BWI76_RS09400at 1972.135 kb on - strandat 1972.188 kb on + strandat 1972.234 kb on + strandat 1972.249 kb on + strandat 1972.293 kb on - strandat 1972.329 kb on + strandat 1972.331 kb on + strandat 1972.434 kb on - strandat 1972.434 kb on - strandat 1972.434 kb on - strandat 1972.441 kb on + strandat 1972.458 kb on - strandat 1972.477 kb on + strand, within BWI76_RS09405at 1972.477 kb on + strand, within BWI76_RS09405at 1972.509 kb on + strand, within BWI76_RS09405at 1972.509 kb on + strand, within BWI76_RS09405at 1972.534 kb on + strand, within BWI76_RS09405at 1972.544 kb on + strand, within BWI76_RS09405at 1972.570 kb on + strand, within BWI76_RS09405at 1972.638 kb on + strandat 1972.646 kb on + strandat 1972.646 kb on - strandat 1972.657 kb on + strand, within BWI76_RS09410at 1972.665 kb on + strand, within BWI76_RS09410at 1972.665 kb on + strand, within BWI76_RS09410at 1972.673 kb on - strand, within BWI76_RS09410at 1972.691 kb on + strand, within BWI76_RS09410at 1972.770 kb on - strand, within BWI76_RS09410at 1972.881 kb on + strand, within BWI76_RS09410at 1972.974 kb on + strand, within BWI76_RS09410at 1972.974 kb on + strand, within BWI76_RS09410at 1973.007 kb on - strand, within BWI76_RS09410at 1973.019 kb on + strand, within BWI76_RS09410at 1973.049 kb on + strand, within BWI76_RS09410at 1973.107 kb on + strand, within BWI76_RS09410at 1973.161 kb on + strandat 1973.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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1,971,574 - BWI76_RS09395 0.74 +1.1
1,971,617 - +2.7
1,971,657 + BWI76_RS09395 0.82 -1.4
1,971,684 + BWI76_RS09395 0.84 +1.1
1,971,713 - BWI76_RS09395 0.87 +0.2
1,971,745 - BWI76_RS09395 0.90 +0.2
1,971,755 - +1.4
1,971,791 - +0.5
1,971,915 + +0.8
1,972,037 + BWI76_RS09400 0.49 -0.0
1,972,070 - BWI76_RS09400 0.64 -0.3
1,972,135 - -0.3
1,972,188 + +0.5
1,972,234 + +0.4
1,972,249 + -0.3
1,972,293 - +1.0
1,972,329 + -0.8
1,972,331 + +0.5
1,972,434 - -0.6
1,972,434 - -0.1
1,972,434 - +0.3
1,972,441 + -0.3
1,972,458 - +1.0
1,972,477 + BWI76_RS09405 0.13 -1.3
1,972,477 + BWI76_RS09405 0.13 -0.9
1,972,509 + BWI76_RS09405 0.31 -0.2
1,972,509 + BWI76_RS09405 0.31 +0.5
1,972,534 + BWI76_RS09405 0.45 -0.3
1,972,544 + BWI76_RS09405 0.51 -2.4
1,972,570 + BWI76_RS09405 0.65 -0.1
1,972,638 + +0.3
1,972,646 + -1.6
1,972,646 - -1.6
1,972,657 + BWI76_RS09410 0.10 +1.9
1,972,665 + BWI76_RS09410 0.12 -1.3
1,972,665 + BWI76_RS09410 0.12 -1.2
1,972,673 - BWI76_RS09410 0.13 +2.3
1,972,691 + BWI76_RS09410 0.16 -0.2
1,972,770 - BWI76_RS09410 0.29 -1.4
1,972,881 + BWI76_RS09410 0.48 +0.1
1,972,974 + BWI76_RS09410 0.63 -0.3
1,972,974 + BWI76_RS09410 0.63 -0.3
1,973,007 - BWI76_RS09410 0.69 +7.1
1,973,019 + BWI76_RS09410 0.71 +0.9
1,973,049 + BWI76_RS09410 0.76 -1.5
1,973,107 + BWI76_RS09410 0.86 +1.7
1,973,161 + +0.2
1,973,235 - +0.0

Or see this region's nucleotide sequence