Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05085

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05080 and BWI76_RS05085 are separated by 1 nucleotidesBWI76_RS05085 and BWI76_RS05090 overlap by 4 nucleotides BWI76_RS05080: BWI76_RS05080 - type II secretion protein F, at 1,062,585 to 1,063,790 _RS05080 BWI76_RS05085: BWI76_RS05085 - general secretion pathway protein GspE, at 1,063,792 to 1,065,285 _RS05085 BWI76_RS05090: BWI76_RS05090 - type II secretion system protein GspD, at 1,065,282 to 1,067,264 _RS05090 Position (kb) 1063 1064 1065 1066Strain fitness (log2 ratio) -1 0 1 2 3at 1062.845 kb on + strand, within BWI76_RS05080at 1062.942 kb on - strand, within BWI76_RS05080at 1063.081 kb on + strand, within BWI76_RS05080at 1063.193 kb on + strand, within BWI76_RS05080at 1063.279 kb on - strand, within BWI76_RS05080at 1063.339 kb on - strand, within BWI76_RS05080at 1063.339 kb on - strand, within BWI76_RS05080at 1063.410 kb on - strand, within BWI76_RS05080at 1063.782 kb on - strandat 1063.942 kb on + strand, within BWI76_RS05085at 1063.998 kb on - strand, within BWI76_RS05085at 1064.041 kb on - strand, within BWI76_RS05085at 1064.192 kb on + strand, within BWI76_RS05085at 1064.228 kb on + strand, within BWI76_RS05085at 1064.444 kb on - strand, within BWI76_RS05085at 1064.484 kb on - strandat 1064.681 kb on - strand, within BWI76_RS05085at 1065.003 kb on + strand, within BWI76_RS05085at 1065.011 kb on - strand, within BWI76_RS05085at 1065.020 kb on - strand, within BWI76_RS05085at 1065.051 kb on + strand, within BWI76_RS05085at 1065.052 kb on - strand, within BWI76_RS05085at 1065.184 kb on + strandat 1065.207 kb on - strandat 1065.211 kb on + strandat 1065.219 kb on - strandat 1065.327 kb on - strandat 1065.446 kb on + strandat 1065.446 kb on + strandat 1065.451 kb on + strandat 1065.704 kb on - strand, within BWI76_RS05090at 1065.797 kb on + strand, within BWI76_RS05090at 1065.805 kb on - strand, within BWI76_RS05090at 1065.966 kb on + strand, within BWI76_RS05090at 1065.972 kb on + strand, within BWI76_RS05090at 1066.043 kb on - strand, within BWI76_RS05090at 1066.088 kb on - strand, within BWI76_RS05090at 1066.149 kb on + strand, within BWI76_RS05090

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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1,062,845 + BWI76_RS05080 0.22 +2.0
1,062,942 - BWI76_RS05080 0.30 -0.5
1,063,081 + BWI76_RS05080 0.41 +1.4
1,063,193 + BWI76_RS05080 0.50 +1.8
1,063,279 - BWI76_RS05080 0.58 +2.6
1,063,339 - BWI76_RS05080 0.63 +0.0
1,063,339 - BWI76_RS05080 0.63 -0.1
1,063,410 - BWI76_RS05080 0.68 +1.0
1,063,782 - +1.0
1,063,942 + BWI76_RS05085 0.10 +1.9
1,063,998 - BWI76_RS05085 0.14 +0.1
1,064,041 - BWI76_RS05085 0.17 +0.9
1,064,192 + BWI76_RS05085 0.27 -0.2
1,064,228 + BWI76_RS05085 0.29 +0.4
1,064,444 - BWI76_RS05085 0.44 -0.4
1,064,484 - +3.0
1,064,681 - BWI76_RS05085 0.60 -1.0
1,065,003 + BWI76_RS05085 0.81 +1.5
1,065,011 - BWI76_RS05085 0.82 +1.5
1,065,020 - BWI76_RS05085 0.82 -0.6
1,065,051 + BWI76_RS05085 0.84 +2.4
1,065,052 - BWI76_RS05085 0.84 -0.4
1,065,184 + +1.5
1,065,207 - -1.1
1,065,211 + -0.1
1,065,219 - -0.0
1,065,327 - -0.8
1,065,446 + -1.3
1,065,446 + -0.7
1,065,451 + +0.0
1,065,704 - BWI76_RS05090 0.21 +0.3
1,065,797 + BWI76_RS05090 0.26 -0.4
1,065,805 - BWI76_RS05090 0.26 -0.5
1,065,966 + BWI76_RS05090 0.34 -0.1
1,065,972 + BWI76_RS05090 0.35 +0.4
1,066,043 - BWI76_RS05090 0.38 +0.2
1,066,088 - BWI76_RS05090 0.41 +0.3
1,066,149 + BWI76_RS05090 0.44 +0.3

Or see this region's nucleotide sequence