Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05080 and BWI76_RS05085 are separated by 1 nucleotides BWI76_RS05085 and BWI76_RS05090 overlap by 4 nucleotides
BWI76_RS05080: BWI76_RS05080 - type II secretion protein F, at 1,062,585 to 1,063,790
_RS05080
BWI76_RS05085: BWI76_RS05085 - general secretion pathway protein GspE, at 1,063,792 to 1,065,285
_RS05085
BWI76_RS05090: BWI76_RS05090 - type II secretion system protein GspD, at 1,065,282 to 1,067,264
_RS05090
Position (kb)
1063
1064
1065
1066 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1062.845 kb on + strand, within BWI76_RS05080 at 1062.942 kb on - strand, within BWI76_RS05080 at 1063.081 kb on + strand, within BWI76_RS05080 at 1063.193 kb on + strand, within BWI76_RS05080 at 1063.279 kb on - strand, within BWI76_RS05080 at 1063.339 kb on - strand, within BWI76_RS05080 at 1063.339 kb on - strand, within BWI76_RS05080 at 1063.410 kb on - strand, within BWI76_RS05080 at 1063.782 kb on - strand at 1063.942 kb on + strand, within BWI76_RS05085 at 1063.998 kb on - strand, within BWI76_RS05085 at 1064.041 kb on - strand, within BWI76_RS05085 at 1064.192 kb on + strand, within BWI76_RS05085 at 1064.228 kb on + strand, within BWI76_RS05085 at 1064.444 kb on - strand, within BWI76_RS05085 at 1064.484 kb on - strand at 1064.681 kb on - strand, within BWI76_RS05085 at 1065.003 kb on + strand, within BWI76_RS05085 at 1065.011 kb on - strand, within BWI76_RS05085 at 1065.020 kb on - strand, within BWI76_RS05085 at 1065.051 kb on + strand, within BWI76_RS05085 at 1065.052 kb on - strand, within BWI76_RS05085 at 1065.184 kb on + strand at 1065.207 kb on - strand at 1065.211 kb on + strand at 1065.219 kb on - strand at 1065.327 kb on - strand at 1065.446 kb on + strand at 1065.446 kb on + strand at 1065.451 kb on + strand at 1065.704 kb on - strand, within BWI76_RS05090 at 1065.797 kb on + strand, within BWI76_RS05090 at 1065.805 kb on - strand, within BWI76_RS05090 at 1065.966 kb on + strand, within BWI76_RS05090 at 1065.972 kb on + strand, within BWI76_RS05090 at 1066.043 kb on - strand, within BWI76_RS05090 at 1066.088 kb on - strand, within BWI76_RS05090 at 1066.149 kb on + strand, within BWI76_RS05090
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 1,062,845 + BWI76_RS05080 0.22 +2.0 1,062,942 - BWI76_RS05080 0.30 -0.5 1,063,081 + BWI76_RS05080 0.41 +1.4 1,063,193 + BWI76_RS05080 0.50 +1.8 1,063,279 - BWI76_RS05080 0.58 +2.6 1,063,339 - BWI76_RS05080 0.63 +0.0 1,063,339 - BWI76_RS05080 0.63 -0.1 1,063,410 - BWI76_RS05080 0.68 +1.0 1,063,782 - +1.0 1,063,942 + BWI76_RS05085 0.10 +1.9 1,063,998 - BWI76_RS05085 0.14 +0.1 1,064,041 - BWI76_RS05085 0.17 +0.9 1,064,192 + BWI76_RS05085 0.27 -0.2 1,064,228 + BWI76_RS05085 0.29 +0.4 1,064,444 - BWI76_RS05085 0.44 -0.4 1,064,484 - +3.0 1,064,681 - BWI76_RS05085 0.60 -1.0 1,065,003 + BWI76_RS05085 0.81 +1.5 1,065,011 - BWI76_RS05085 0.82 +1.5 1,065,020 - BWI76_RS05085 0.82 -0.6 1,065,051 + BWI76_RS05085 0.84 +2.4 1,065,052 - BWI76_RS05085 0.84 -0.4 1,065,184 + +1.5 1,065,207 - -1.1 1,065,211 + -0.1 1,065,219 - -0.0 1,065,327 - -0.8 1,065,446 + -1.3 1,065,446 + -0.7 1,065,451 + +0.0 1,065,704 - BWI76_RS05090 0.21 +0.3 1,065,797 + BWI76_RS05090 0.26 -0.4 1,065,805 - BWI76_RS05090 0.26 -0.5 1,065,966 + BWI76_RS05090 0.34 -0.1 1,065,972 + BWI76_RS05090 0.35 +0.4 1,066,043 - BWI76_RS05090 0.38 +0.2 1,066,088 - BWI76_RS05090 0.41 +0.3 1,066,149 + BWI76_RS05090 0.44 +0.3
Or see this region's nucleotide sequence