Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04900

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04890 and BWI76_RS04895 are separated by 162 nucleotidesBWI76_RS04895 and BWI76_RS04900 are separated by 50 nucleotidesBWI76_RS04900 and BWI76_RS04905 are separated by 10 nucleotides BWI76_RS04890: BWI76_RS04890 - dihydrolipoyl dehydrogenase, at 1,024,781 to 1,026,205 _RS04890 BWI76_RS04895: BWI76_RS04895 - hypothetical protein, at 1,026,368 to 1,026,652 _RS04895 BWI76_RS04900: BWI76_RS04900 - DUF2950 domain-containing protein, at 1,026,703 to 1,027,497 _RS04900 BWI76_RS04905: BWI76_RS04905 - DUF3300 domain-containing protein, at 1,027,508 to 1,029,094 _RS04905 Position (kb) 1026 1027 1028Strain fitness (log2 ratio) -2 -1 0 1 2at 1026.265 kb on + strandat 1026.273 kb on - strandat 1026.273 kb on - strandat 1026.384 kb on - strandat 1026.400 kb on - strand, within BWI76_RS04895at 1026.416 kb on + strand, within BWI76_RS04895at 1026.424 kb on - strand, within BWI76_RS04895at 1026.944 kb on - strand, within BWI76_RS04900at 1027.291 kb on - strand, within BWI76_RS04900at 1027.562 kb on - strandat 1027.630 kb on - strandat 1027.667 kb on - strand, within BWI76_RS04905at 1027.786 kb on + strand, within BWI76_RS04905at 1028.048 kb on - strand, within BWI76_RS04905at 1028.268 kb on + strand, within BWI76_RS04905

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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1,026,265 + -0.3
1,026,273 - +1.4
1,026,273 - -2.0
1,026,384 - -0.3
1,026,400 - BWI76_RS04895 0.11 -0.6
1,026,416 + BWI76_RS04895 0.17 -1.3
1,026,424 - BWI76_RS04895 0.20 +0.4
1,026,944 - BWI76_RS04900 0.30 +1.8
1,027,291 - BWI76_RS04900 0.74 -1.0
1,027,562 - +0.2
1,027,630 - +1.0
1,027,667 - BWI76_RS04905 0.10 -0.8
1,027,786 + BWI76_RS04905 0.18 +0.0
1,028,048 - BWI76_RS04905 0.34 -1.0
1,028,268 + BWI76_RS04905 0.48 -0.5

Or see this region's nucleotide sequence