Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02305

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02295 and BWI76_RS02300 are separated by 300 nucleotidesBWI76_RS02300 and BWI76_RS02305 are separated by 115 nucleotidesBWI76_RS02305 and BWI76_RS02310 are separated by 67 nucleotidesBWI76_RS02310 and BWI76_RS02315 are separated by 35 nucleotides BWI76_RS02295: BWI76_RS02295 - glycosyl transferase family 1, at 470,363 to 472,585 _RS02295 BWI76_RS02300: BWI76_RS02300 - tRNA-Phe, at 472,886 to 472,961 _RS02300 BWI76_RS02305: BWI76_RS02305 - hypothetical protein, at 473,077 to 475,164 _RS02305 BWI76_RS02310: BWI76_RS02310 - transcriptional regulator, at 475,232 to 475,807 _RS02310 BWI76_RS02315: BWI76_RS02315 - protein-disulfide reductase DsbD, at 475,843 to 477,600 _RS02315 Position (kb) 473 474 475 476Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 472.078 kb on + strand, within BWI76_RS02295at 472.083 kb on + strand, within BWI76_RS02295at 472.099 kb on - strand, within BWI76_RS02295at 472.100 kb on - strand, within BWI76_RS02295at 472.110 kb on - strand, within BWI76_RS02295at 472.126 kb on + strand, within BWI76_RS02295at 472.128 kb on - strand, within BWI76_RS02295at 472.128 kb on - strand, within BWI76_RS02295at 472.129 kb on - strand, within BWI76_RS02295at 472.142 kb on + strand, within BWI76_RS02295at 472.184 kb on - strand, within BWI76_RS02295at 472.184 kb on - strand, within BWI76_RS02295at 472.218 kb on + strand, within BWI76_RS02295at 472.218 kb on + strand, within BWI76_RS02295at 472.238 kb on - strand, within BWI76_RS02295at 472.238 kb on - strand, within BWI76_RS02295at 472.283 kb on - strand, within BWI76_RS02295at 472.321 kb on + strand, within BWI76_RS02295at 472.322 kb on + strand, within BWI76_RS02295at 472.340 kb on - strandat 472.367 kb on + strandat 472.367 kb on + strandat 472.367 kb on + strandat 472.368 kb on + strandat 472.381 kb on + strandat 472.386 kb on + strandat 472.386 kb on + strandat 472.389 kb on - strandat 472.389 kb on - strandat 472.394 kb on - strandat 472.394 kb on - strandat 472.394 kb on - strandat 472.395 kb on - strandat 472.395 kb on - strandat 472.414 kb on - strandat 472.418 kb on - strandat 472.418 kb on - strandat 472.445 kb on + strandat 472.464 kb on + strandat 472.486 kb on + strandat 472.486 kb on + strandat 472.486 kb on + strandat 472.514 kb on + strandat 472.520 kb on + strandat 472.521 kb on - strandat 472.526 kb on + strandat 472.532 kb on + strandat 472.534 kb on - strandat 472.539 kb on + strandat 472.549 kb on - strandat 472.579 kb on + strandat 472.580 kb on + strandat 472.584 kb on + strandat 472.584 kb on + strandat 472.592 kb on - strandat 472.592 kb on - strandat 472.592 kb on - strandat 472.599 kb on + strandat 472.610 kb on - strandat 472.635 kb on + strandat 472.657 kb on + strandat 472.657 kb on + strandat 472.659 kb on - strandat 472.663 kb on - strandat 472.663 kb on - strandat 472.700 kb on + strandat 472.700 kb on + strandat 472.700 kb on + strandat 472.708 kb on - strandat 472.708 kb on - strandat 472.727 kb on - strandat 472.740 kb on + strandat 472.740 kb on + strandat 472.742 kb on - strandat 472.762 kb on - strandat 472.762 kb on - strandat 472.762 kb on - strandat 472.762 kb on - strandat 472.767 kb on - strandat 472.869 kb on - strandat 472.888 kb on - strandat 472.888 kb on - strandat 473.403 kb on - strand, within BWI76_RS02305at 473.408 kb on + strand, within BWI76_RS02305at 473.473 kb on - strand, within BWI76_RS02305at 473.625 kb on - strand, within BWI76_RS02305at 473.649 kb on + strand, within BWI76_RS02305at 473.665 kb on - strand, within BWI76_RS02305at 473.667 kb on + strand, within BWI76_RS02305at 473.799 kb on - strand, within BWI76_RS02305at 473.813 kb on - strand, within BWI76_RS02305at 473.861 kb on + strand, within BWI76_RS02305at 473.967 kb on - strand, within BWI76_RS02305at 474.073 kb on - strand, within BWI76_RS02305at 474.097 kb on + strand, within BWI76_RS02305at 474.143 kb on + strand, within BWI76_RS02305at 474.351 kb on + strand, within BWI76_RS02305at 474.390 kb on + strand, within BWI76_RS02305at 474.390 kb on + strand, within BWI76_RS02305at 474.395 kb on - strand, within BWI76_RS02305at 474.400 kb on - strand, within BWI76_RS02305at 474.523 kb on + strand, within BWI76_RS02305at 474.664 kb on + strand, within BWI76_RS02305at 474.672 kb on - strand, within BWI76_RS02305at 474.890 kb on + strand, within BWI76_RS02305at 474.996 kb on - strandat 475.014 kb on + strandat 475.121 kb on + strandat 475.127 kb on - strandat 475.146 kb on + strandat 475.172 kb on - strandat 475.172 kb on - strandat 475.251 kb on + strandat 475.251 kb on + strandat 475.328 kb on - strand, within BWI76_RS02310at 475.346 kb on + strand, within BWI76_RS02310at 475.540 kb on + strand, within BWI76_RS02310at 475.548 kb on - strand, within BWI76_RS02310at 475.592 kb on - strand, within BWI76_RS02310at 475.688 kb on - strand, within BWI76_RS02310at 475.699 kb on + strand, within BWI76_RS02310at 475.906 kb on - strandat 475.973 kb on - strandat 476.037 kb on + strand, within BWI76_RS02315at 476.045 kb on - strand, within BWI76_RS02315at 476.078 kb on - strand, within BWI76_RS02315

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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472,078 + BWI76_RS02295 0.77 -0.9
472,083 + BWI76_RS02295 0.77 +3.0
472,099 - BWI76_RS02295 0.78 +0.1
472,100 - BWI76_RS02295 0.78 +1.1
472,110 - BWI76_RS02295 0.79 +2.9
472,126 + BWI76_RS02295 0.79 -0.2
472,128 - BWI76_RS02295 0.79 +1.4
472,128 - BWI76_RS02295 0.79 +0.2
472,129 - BWI76_RS02295 0.79 -1.3
472,142 + BWI76_RS02295 0.80 -0.2
472,184 - BWI76_RS02295 0.82 -0.2
472,184 - BWI76_RS02295 0.82 +0.6
472,218 + BWI76_RS02295 0.83 -0.6
472,218 + BWI76_RS02295 0.83 +1.3
472,238 - BWI76_RS02295 0.84 +1.1
472,238 - BWI76_RS02295 0.84 -0.2
472,283 - BWI76_RS02295 0.86 +0.5
472,321 + BWI76_RS02295 0.88 -0.2
472,322 + BWI76_RS02295 0.88 -2.9
472,340 - +2.0
472,367 + +0.1
472,367 + -0.9
472,367 + -0.5
472,368 + -1.7
472,381 + +0.3
472,386 + -1.8
472,386 + -0.4
472,389 - -0.6
472,389 - +0.3
472,394 - -2.1
472,394 - -0.3
472,394 - +0.9
472,395 - -0.4
472,395 - -0.7
472,414 - +1.0
472,418 - +1.0
472,418 - -1.2
472,445 + -0.4
472,464 + +1.3
472,486 + -0.7
472,486 + -1.0
472,486 + -1.7
472,514 + +4.1
472,520 + +1.1
472,521 - +0.3
472,526 + +0.2
472,532 + +1.2
472,534 - -0.1
472,539 + +0.2
472,549 - +1.9
472,579 + +0.7
472,580 + -1.0
472,584 + -0.4
472,584 + +0.0
472,592 - +4.6
472,592 - +0.8
472,592 - -0.8
472,599 + +0.6
472,610 - +1.4
472,635 + +0.4
472,657 + +0.7
472,657 + +1.2
472,659 - +0.0
472,663 - -0.7
472,663 - -0.4
472,700 + -2.7
472,700 + +0.2
472,700 + -0.1
472,708 - +0.7
472,708 - -0.0
472,727 - -0.5
472,740 + -0.2
472,740 + -0.4
472,742 - +0.4
472,762 - -0.3
472,762 - -0.5
472,762 - -1.0
472,762 - +0.1
472,767 - +0.2
472,869 - -0.5
472,888 - -0.8
472,888 - -0.7
473,403 - BWI76_RS02305 0.16 +1.2
473,408 + BWI76_RS02305 0.16 +0.5
473,473 - BWI76_RS02305 0.19 +0.2
473,625 - BWI76_RS02305 0.26 +0.9
473,649 + BWI76_RS02305 0.27 +0.4
473,665 - BWI76_RS02305 0.28 -0.8
473,667 + BWI76_RS02305 0.28 +0.6
473,799 - BWI76_RS02305 0.35 +0.3
473,813 - BWI76_RS02305 0.35 +0.6
473,861 + BWI76_RS02305 0.38 +0.3
473,967 - BWI76_RS02305 0.43 +0.8
474,073 - BWI76_RS02305 0.48 -0.9
474,097 + BWI76_RS02305 0.49 +0.3
474,143 + BWI76_RS02305 0.51 -0.3
474,351 + BWI76_RS02305 0.61 +0.2
474,390 + BWI76_RS02305 0.63 -0.8
474,390 + BWI76_RS02305 0.63 +0.1
474,395 - BWI76_RS02305 0.63 +1.4
474,400 - BWI76_RS02305 0.63 +0.0
474,523 + BWI76_RS02305 0.69 +1.7
474,664 + BWI76_RS02305 0.76 -0.0
474,672 - BWI76_RS02305 0.76 -0.9
474,890 + BWI76_RS02305 0.87 +2.0
474,996 - -0.8
475,014 + -1.6
475,121 + +1.4
475,127 - +1.2
475,146 + -0.8
475,172 - +0.2
475,172 - +0.7
475,251 + -0.4
475,251 + -3.0
475,328 - BWI76_RS02310 0.17 -0.2
475,346 + BWI76_RS02310 0.20 +0.9
475,540 + BWI76_RS02310 0.53 -2.4
475,548 - BWI76_RS02310 0.55 -0.1
475,592 - BWI76_RS02310 0.62 -0.3
475,688 - BWI76_RS02310 0.79 -0.1
475,699 + BWI76_RS02310 0.81 -0.5
475,906 - -0.6
475,973 - -0.8
476,037 + BWI76_RS02315 0.11 +1.0
476,045 - BWI76_RS02315 0.11 +0.0
476,078 - BWI76_RS02315 0.13 -0.6

Or see this region's nucleotide sequence