Strain Fitness in Shewanella loihica PV-4 around Shew_3703

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3702 and Shew_3703 are separated by 135 nucleotidesShew_3703 and Shew_3704 overlap by 8 nucleotides Shew_3702: Shew_3702 - glycosyl transferase family protein (RefSeq), at 4,406,512 to 4,407,591 _3702 Shew_3703: Shew_3703 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 4,407,727 to 4,408,275 _3703 Shew_3704: Shew_3704 - dTDP-glucose 4,6-dehydratase (RefSeq), at 4,408,268 to 4,409,338 _3704 Position (kb) 4407 4408 4409Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4406.743 kb on - strand, within Shew_3702at 4406.945 kb on + strand, within Shew_3702at 4407.026 kb on + strand, within Shew_3702at 4407.146 kb on + strand, within Shew_3702at 4407.267 kb on - strand, within Shew_3702at 4407.979 kb on + strand, within Shew_3703at 4408.062 kb on + strand, within Shew_3703at 4408.285 kb on - strandat 4408.390 kb on - strand, within Shew_3704at 4408.392 kb on + strand, within Shew_3704at 4408.493 kb on - strand, within Shew_3704at 4408.611 kb on + strand, within Shew_3704at 4408.640 kb on - strand, within Shew_3704at 4408.915 kb on + strand, within Shew_3704at 4408.985 kb on - strand, within Shew_3704at 4408.998 kb on + strand, within Shew_3704at 4409.006 kb on - strand, within Shew_3704

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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4,406,743 - Shew_3702 0.21 -2.8
4,406,945 + Shew_3702 0.40 -2.6
4,407,026 + Shew_3702 0.48 -3.1
4,407,146 + Shew_3702 0.59 -2.3
4,407,267 - Shew_3702 0.70 -5.6
4,407,979 + Shew_3703 0.46 -0.0
4,408,062 + Shew_3703 0.61 -0.1
4,408,285 - -0.5
4,408,390 - Shew_3704 0.11 +0.2
4,408,392 + Shew_3704 0.12 -0.7
4,408,493 - Shew_3704 0.21 -0.6
4,408,611 + Shew_3704 0.32 +0.2
4,408,640 - Shew_3704 0.35 +0.3
4,408,915 + Shew_3704 0.60 +0.3
4,408,985 - Shew_3704 0.67 -0.2
4,408,998 + Shew_3704 0.68 +0.1
4,409,006 - Shew_3704 0.69 +0.2

Or see this region's nucleotide sequence