Strain Fitness in Shewanella loihica PV-4 around Shew_3264

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3263 and Shew_3264 are separated by 33 nucleotidesShew_3264 and Shew_3265 are separated by 525 nucleotidesShew_3265 and dipZ overlap by 4 nucleotides Shew_3263: Shew_3263 - serine/threonine protein kinase (RefSeq), at 3,900,842 to 3,902,677 _3263 Shew_3264: Shew_3264 - FxsA cytoplasmic membrane protein (RefSeq), at 3,902,711 to 3,903,304 _3264 Shew_3265: Shew_3265 - CutA1 divalent ion tolerance protein (RefSeq), at 3,903,830 to 3,904,153 _3265 Shew_3266: dipZ - thiol:disulfide interchange protein precursor (RefSeq), at 3,904,150 to 3,905,958 dipZ Position (kb) 3902 3903 3904Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3901.716 kb on + strand, within Shew_3263at 3901.830 kb on + strand, within Shew_3263at 3902.084 kb on - strand, within Shew_3263at 3902.174 kb on - strand, within Shew_3263at 3902.184 kb on - strand, within Shew_3263at 3902.184 kb on - strand, within Shew_3263at 3902.184 kb on - strand, within Shew_3263at 3902.279 kb on - strand, within Shew_3263at 3902.919 kb on - strand, within Shew_3264at 3902.954 kb on - strand, within Shew_3264at 3903.076 kb on - strand, within Shew_3264at 3903.221 kb on + strand, within Shew_3264at 3903.421 kb on - strandat 3903.680 kb on - strandat 3903.788 kb on + strandat 3903.956 kb on + strand, within Shew_3265

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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3,901,716 + Shew_3263 0.48 -0.5
3,901,830 + Shew_3263 0.54 -0.8
3,902,084 - Shew_3263 0.68 -0.2
3,902,174 - Shew_3263 0.73 +0.2
3,902,184 - Shew_3263 0.73 -0.2
3,902,184 - Shew_3263 0.73 -0.1
3,902,184 - Shew_3263 0.73 +0.9
3,902,279 - Shew_3263 0.78 -1.2
3,902,919 - Shew_3264 0.35 -1.1
3,902,954 - Shew_3264 0.41 -0.9
3,903,076 - Shew_3264 0.61 -0.4
3,903,221 + Shew_3264 0.86 -0.0
3,903,421 - +0.1
3,903,680 - +5.4
3,903,788 + +0.2
3,903,956 + Shew_3265 0.39 -0.2

Or see this region's nucleotide sequence