Strain Fitness in Shewanella loihica PV-4 around Shew_2863
Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.0625 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,393,974 | + | Shew_2862 | 0.30 | +0.0 | |
3,394,038 | + | Shew_2862 | 0.39 | -0.6 | |
3,394,598 | + | +0.1 | |||
3,394,606 | - | Shew_2863 | 0.11 | +0.0 | |
3,394,606 | - | Shew_2863 | 0.11 | -0.1 | |
3,395,036 | - | Shew_2863 | 0.69 | -0.5 | |
3,395,083 | + | Shew_2863 | 0.75 | -0.4 | |
3,395,083 | + | Shew_2863 | 0.75 | -0.3 | |
3,395,135 | + | Shew_2863 | 0.82 | +0.0 | |
3,395,188 | - | Shew_2863 | 0.89 | -0.6 | |
3,395,606 | - | Shew_2864 | 0.14 | -0.9 | |
3,395,890 | + | Shew_2864 | 0.28 | +0.0 | |
3,395,890 | + | Shew_2864 | 0.28 | +0.1 | |
3,395,890 | + | Shew_2864 | 0.28 | +0.3 | |
3,395,898 | - | Shew_2864 | 0.28 | +0.1 | |
3,395,910 | + | Shew_2864 | 0.29 | +0.3 |
Or see this region's nucleotide sequence