Strain Fitness in Shewanella loihica PV-4 around Shew_2863

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2861 and Shew_2862 are separated by 4 nucleotidesShew_2862 and Shew_2863 are separated by 14 nucleotidesShew_2863 and Shew_2864 are separated by 32 nucleotides Shew_2861: Shew_2861 - aminoglycoside phosphotransferase (RefSeq), at 3,392,700 to 3,393,737 _2861 Shew_2862: Shew_2862 - short chain dehydrogenase (RefSeq), at 3,393,742 to 3,394,509 _2862 Shew_2863: Shew_2863 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,394,524 to 3,395,270 _2863 Shew_2864: Shew_2864 - 3-hydroxyacyl-CoA dehydrogenase, NAD-binding (RefSeq), at 3,395,303 to 3,397,429 _2864 Position (kb) 3394 3395 3396Strain fitness (log2 ratio) -1 0 1at 3393.974 kb on + strand, within Shew_2862at 3394.038 kb on + strand, within Shew_2862at 3394.598 kb on + strandat 3394.606 kb on - strand, within Shew_2863at 3394.606 kb on - strand, within Shew_2863at 3395.036 kb on - strand, within Shew_2863at 3395.083 kb on + strand, within Shew_2863at 3395.083 kb on + strand, within Shew_2863at 3395.135 kb on + strand, within Shew_2863at 3395.188 kb on - strand, within Shew_2863at 3395.606 kb on - strand, within Shew_2864at 3395.890 kb on + strand, within Shew_2864at 3395.890 kb on + strand, within Shew_2864at 3395.890 kb on + strand, within Shew_2864at 3395.898 kb on - strand, within Shew_2864at 3395.910 kb on + strand, within Shew_2864

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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3,393,974 + Shew_2862 0.30 +0.0
3,394,038 + Shew_2862 0.39 -0.6
3,394,598 + +0.1
3,394,606 - Shew_2863 0.11 +0.0
3,394,606 - Shew_2863 0.11 -0.1
3,395,036 - Shew_2863 0.69 -0.5
3,395,083 + Shew_2863 0.75 -0.4
3,395,083 + Shew_2863 0.75 -0.3
3,395,135 + Shew_2863 0.82 +0.0
3,395,188 - Shew_2863 0.89 -0.6
3,395,606 - Shew_2864 0.14 -0.9
3,395,890 + Shew_2864 0.28 +0.0
3,395,890 + Shew_2864 0.28 +0.1
3,395,890 + Shew_2864 0.28 +0.3
3,395,898 - Shew_2864 0.28 +0.1
3,395,910 + Shew_2864 0.29 +0.3

Or see this region's nucleotide sequence