Strain Fitness in Shewanella loihica PV-4 around Shew_2860
Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.0625 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,390,432 | + | Shew_2858 | 0.74 | -0.1 | |
3,391,069 | + | Shew_2859 | 0.47 | +0.2 | |
3,391,668 | - | Shew_2860 | 0.20 | -0.2 | |
3,392,075 | - | Shew_2860 | 0.52 | -1.2 | |
3,392,527 | + | Shew_2860 | 0.86 | -0.5 | |
3,392,818 | - | Shew_2861 | 0.11 | +0.4 | |
3,392,848 | + | Shew_2861 | 0.14 | -0.1 | |
3,392,856 | - | Shew_2861 | 0.15 | -0.6 | |
3,392,961 | + | Shew_2861 | 0.25 | +0.4 | |
3,392,961 | + | Shew_2861 | 0.25 | +0.4 | |
3,393,091 | - | Shew_2861 | 0.38 | -0.0 | |
3,393,139 | + | Shew_2861 | 0.42 | -0.3 | |
3,393,139 | + | Shew_2861 | 0.42 | -0.2 | |
3,393,309 | - | Shew_2861 | 0.59 | -0.2 | |
3,393,369 | + | Shew_2861 | 0.64 | +0.9 | |
3,393,371 | + | Shew_2861 | 0.65 | -0.8 |
Or see this region's nucleotide sequence