Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2790 and Shew_2791 are separated by 251 nucleotides Shew_2791 and Shew_2792 are separated by 62 nucleotides
Shew_2790: Shew_2790 - nucleoside recognition domain-containing protein (RefSeq), at 3,299,791 to 3,301,146
_2790
Shew_2791: Shew_2791 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,301,398 to 3,305,078
_2791
Shew_2792: Shew_2792 - phospholipid/glycerol acyltransferase (RefSeq), at 3,305,141 to 3,306,958
_2792
Position (kb)
3301
3302
3303
3304
3305
3306 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 3300.486 kb on + strand, within Shew_2790 at 3300.679 kb on + strand, within Shew_2790 at 3301.450 kb on + strand at 3301.753 kb on - strand at 3302.077 kb on - strand, within Shew_2791 at 3302.077 kb on - strand, within Shew_2791 at 3302.696 kb on + strand, within Shew_2791 at 3302.843 kb on - strand, within Shew_2791 at 3302.985 kb on + strand, within Shew_2791 at 3303.217 kb on + strand, within Shew_2791 at 3303.597 kb on - strand, within Shew_2791 at 3303.771 kb on + strand, within Shew_2791 at 3303.794 kb on + strand, within Shew_2791 at 3303.895 kb on + strand, within Shew_2791 at 3304.104 kb on - strand, within Shew_2791 at 3304.263 kb on - strand, within Shew_2791 at 3304.436 kb on - strand, within Shew_2791 at 3304.555 kb on + strand, within Shew_2791 at 3304.581 kb on - strand, within Shew_2791 at 3304.732 kb on + strand at 3305.412 kb on + strand, within Shew_2792 at 3305.910 kb on - strand, within Shew_2792
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 3,300,486 + Shew_2790 0.51 -0.6 3,300,679 + Shew_2790 0.65 +0.5 3,301,450 + -0.0 3,301,753 - +0.1 3,302,077 - Shew_2791 0.18 -0.1 3,302,077 - Shew_2791 0.18 +0.4 3,302,696 + Shew_2791 0.35 +0.4 3,302,843 - Shew_2791 0.39 +0.4 3,302,985 + Shew_2791 0.43 -0.1 3,303,217 + Shew_2791 0.49 -0.3 3,303,597 - Shew_2791 0.60 +6.1 3,303,771 + Shew_2791 0.64 +0.1 3,303,794 + Shew_2791 0.65 -0.0 3,303,895 + Shew_2791 0.68 +0.2 3,304,104 - Shew_2791 0.74 -0.1 3,304,263 - Shew_2791 0.78 +0.4 3,304,436 - Shew_2791 0.83 -0.1 3,304,555 + Shew_2791 0.86 -0.3 3,304,581 - Shew_2791 0.86 -0.2 3,304,732 + +0.7 3,305,412 + Shew_2792 0.15 -0.0 3,305,910 - Shew_2792 0.42 -0.1
Or see this region's nucleotide sequence