Strain Fitness in Shewanella loihica PV-4 around Shew_2637

Experiment: Fusidic 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_R0090 and Shew_2636 are separated by 104 nucleotidesShew_2636 and Shew_2637 are separated by 81 nucleotidesShew_2637 and dapD are separated by 35 nucleotides Shew_R0090: Shew_R0090 - no description, at 3,110,419 to 3,110,571 _R0090 Shew_2636: Shew_2636 - methionine aminopeptidase (RefSeq), at 3,110,676 to 3,111,473 _2636 Shew_2637: Shew_2637 - PII uridylyl-transferase (RefSeq), at 3,111,555 to 3,114,128 _2637 Shew_2638: dapD - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (RefSeq), at 3,114,164 to 3,114,988 dapD Position (kb) 3111 3112 3113 3114 3115Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 3111.504 kb on + strandat 3111.525 kb on + strandat 3111.783 kb on + strandat 3112.140 kb on - strand, within Shew_2637at 3112.644 kb on - strand, within Shew_2637at 3112.651 kb on + strand, within Shew_2637at 3113.164 kb on + strand, within Shew_2637at 3113.283 kb on - strand, within Shew_2637at 3113.384 kb on - strand, within Shew_2637at 3113.597 kb on + strand, within Shew_2637

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
remove
3,111,504 + +2.2
3,111,525 + -0.0
3,111,783 + +4.4
3,112,140 - Shew_2637 0.23 +5.4
3,112,644 - Shew_2637 0.42 +5.8
3,112,651 + Shew_2637 0.43 +5.6
3,113,164 + Shew_2637 0.63 +6.5
3,113,283 - Shew_2637 0.67 +6.6
3,113,384 - Shew_2637 0.71 +5.5
3,113,597 + Shew_2637 0.79 +5.2

Or see this region's nucleotide sequence