Strain Fitness in Shewanella loihica PV-4 around Shew_2414

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2411 and Shew_2412 are separated by 82 nucleotidesShew_2412 and Shew_2413 are separated by 2 nucleotidesShew_2413 and Shew_2414 are separated by 22 nucleotidesShew_2414 and Shew_2415 are separated by 20 nucleotides Shew_2411: Shew_2411 - FAD dependent oxidoreductase (RefSeq), at 2,830,891 to 2,832,951 _2411 Shew_2412: Shew_2412 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 2,833,034 to 2,833,558 _2412 Shew_2413: Shew_2413 - hypothetical protein (RefSeq), at 2,833,561 to 2,833,842 _2413 Shew_2414: Shew_2414 - ATP-NAD/AcoX kinase (RefSeq), at 2,833,865 to 2,835,031 _2414 Shew_2415: Shew_2415 - major facilitator transporter (RefSeq), at 2,835,052 to 2,836,260 _2415 Position (kb) 2833 2834 2835 2836Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2833.395 kb on + strand, within Shew_2412at 2833.418 kb on - strand, within Shew_2412at 2833.802 kb on - strand, within Shew_2413at 2833.885 kb on + strandat 2834.038 kb on - strand, within Shew_2414at 2834.640 kb on - strand, within Shew_2414at 2834.907 kb on + strand, within Shew_2414at 2835.327 kb on + strand, within Shew_2415

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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2,833,395 + Shew_2412 0.69 -0.1
2,833,418 - Shew_2412 0.73 -1.8
2,833,802 - Shew_2413 0.85 +0.3
2,833,885 + -0.6
2,834,038 - Shew_2414 0.15 +0.8
2,834,640 - Shew_2414 0.66 +0.2
2,834,907 + Shew_2414 0.89 +3.2
2,835,327 + Shew_2415 0.23 +0.2

Or see this region's nucleotide sequence