Strain Fitness in Shewanella loihica PV-4 around Shew_1904

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1903 and Shew_1904 are separated by 127 nucleotidesShew_1904 and Shew_1905 are separated by 163 nucleotides Shew_1903: Shew_1903 - para-aminobenzoate synthase, subunit I (RefSeq), at 2,197,686 to 2,199,119 _1903 Shew_1904: Shew_1904 - tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit (RefSeq), at 2,199,247 to 2,200,770 _1904 Shew_1905: Shew_1905 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,200,934 to 2,202,991 _1905 Position (kb) 2199 2200 2201Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2198.410 kb on - strand, within Shew_1903at 2198.630 kb on - strand, within Shew_1903at 2199.025 kb on - strandat 2199.524 kb on - strand, within Shew_1904at 2199.929 kb on - strand, within Shew_1904at 2201.351 kb on - strand, within Shew_1905

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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2,198,410 - Shew_1903 0.50 +1.1
2,198,630 - Shew_1903 0.66 -1.3
2,199,025 - +0.5
2,199,524 - Shew_1904 0.18 +5.3
2,199,929 - Shew_1904 0.45 +4.7
2,201,351 - Shew_1905 0.20 +0.4

Or see this region's nucleotide sequence