Strain Fitness in Shewanella loihica PV-4 around Shew_1843

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1841 and Shew_1842 are separated by 169 nucleotidesShew_1842 and Shew_1843 are separated by 169 nucleotidesShew_1843 and Shew_1844 are separated by 71 nucleotides Shew_1841: Shew_1841 - peptidase M48, Ste24p (RefSeq), at 2,117,114 to 2,118,571 _1841 Shew_1842: Shew_1842 - SirA family protein (RefSeq), at 2,118,741 to 2,118,962 _1842 Shew_1843: Shew_1843 - hypothetical protein (RefSeq), at 2,119,132 to 2,120,232 _1843 Shew_1844: Shew_1844 - chromosome replication initiation inhibitor protein (RefSeq), at 2,120,304 to 2,121,191 _1844 Position (kb) 2119 2120 2121Strain fitness (log2 ratio) -2 -1 0 1at 2118.148 kb on + strand, within Shew_1841at 2118.842 kb on + strand, within Shew_1842at 2119.479 kb on - strand, within Shew_1843at 2120.653 kb on - strand, within Shew_1844at 2120.687 kb on - strand, within Shew_1844at 2120.766 kb on + strand, within Shew_1844at 2120.774 kb on - strand, within Shew_1844at 2120.800 kb on - strand, within Shew_1844at 2120.808 kb on - strand, within Shew_1844at 2121.220 kb on + strandat 2121.220 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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2,118,148 + Shew_1841 0.71 -2.5
2,118,842 + Shew_1842 0.45 -0.8
2,119,479 - Shew_1843 0.32 +0.2
2,120,653 - Shew_1844 0.39 -0.1
2,120,687 - Shew_1844 0.43 +0.1
2,120,766 + Shew_1844 0.52 +0.2
2,120,774 - Shew_1844 0.53 +0.1
2,120,800 - Shew_1844 0.56 +0.5
2,120,808 - Shew_1844 0.57 +0.4
2,121,220 + +0.4
2,121,220 + +0.1

Or see this region's nucleotide sequence