Strain Fitness in Shewanella loihica PV-4 around Shew_0841

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0840 and Shew_0841 are separated by 192 nucleotidesShew_0841 and Shew_0842 are separated by 91 nucleotidesShew_0842 and Shew_0843 are separated by 61 nucleotides Shew_0840: Shew_0840 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 963,046 to 963,813 _0840 Shew_0841: Shew_0841 - hypothetical protein (RefSeq), at 964,006 to 964,380 _0841 Shew_0842: Shew_0842 - two component LuxR family transcriptional regulator (RefSeq), at 964,472 to 965,101 _0842 Shew_0843: Shew_0843 - nitrate/nitrite sensor protein NarQ (RefSeq), at 965,163 to 966,866 _0843 Position (kb) 964 965Strain fitness (log2 ratio) -1 0 1at 963.010 kb on - strandat 963.048 kb on - strandat 963.146 kb on - strand, within Shew_0840at 963.288 kb on - strand, within Shew_0840at 963.335 kb on + strand, within Shew_0840at 963.693 kb on + strand, within Shew_0840at 964.169 kb on - strand, within Shew_0841at 964.210 kb on - strand, within Shew_0841at 964.252 kb on - strand, within Shew_0841at 964.278 kb on + strand, within Shew_0841at 964.477 kb on + strandat 964.485 kb on - strandat 964.547 kb on + strand, within Shew_0842at 964.725 kb on + strand, within Shew_0842at 964.919 kb on - strand, within Shew_0842at 965.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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963,010 - +0.0
963,048 - -0.2
963,146 - Shew_0840 0.13 +0.1
963,288 - Shew_0840 0.32 -0.3
963,335 + Shew_0840 0.38 +0.1
963,693 + Shew_0840 0.84 +0.0
964,169 - Shew_0841 0.43 +0.6
964,210 - Shew_0841 0.54 +0.5
964,252 - Shew_0841 0.66 +0.2
964,278 + Shew_0841 0.73 +0.7
964,477 + -0.5
964,485 - -0.8
964,547 + Shew_0842 0.12 -0.8
964,725 + Shew_0842 0.40 -1.3
964,919 - Shew_0842 0.71 -1.6
965,227 - -0.9

Or see this region's nucleotide sequence