Strain Fitness in Shewanella loihica PV-4 around Shew_0317

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0316 and Shew_0317 are separated by 55 nucleotidesShew_0317 and hemC are separated by 2 nucleotides Shew_0316: Shew_0316 - protein of unknown function DUF513, hemX (RefSeq), at 361,731 to 362,873 _0316 Shew_0317: Shew_0317 - uroporphyrinogen III synthase HEM4 (RefSeq), at 362,929 to 363,660 _0317 Shew_0318: hemC - porphobilinogen deaminase (RefSeq), at 363,663 to 364,616 hemC Position (kb) 362 363 364Strain fitness (log2 ratio) -1 0 1at 361.962 kb on - strand, within Shew_0316at 362.185 kb on - strand, within Shew_0316at 362.185 kb on - strand, within Shew_0316at 362.234 kb on - strand, within Shew_0316at 362.452 kb on + strand, within Shew_0316at 362.558 kb on + strand, within Shew_0316at 362.884 kb on + strandat 362.949 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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361,962 - Shew_0316 0.20 +0.8
362,185 - Shew_0316 0.40 +0.9
362,185 - Shew_0316 0.40 +0.6
362,234 - Shew_0316 0.44 -0.6
362,452 + Shew_0316 0.63 +0.4
362,558 + Shew_0316 0.72 +0.7
362,884 + +0.2
362,949 - +1.4

Or see this region's nucleotide sequence