Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0365 and Dshi_0366 are separated by 6 nucleotides Dshi_0366 and Dshi_0367 are separated by 207 nucleotides Dshi_0367 and Dshi_0368 overlap by 4 nucleotides Dshi_0368 and Dshi_0369 are separated by 17 nucleotides
Dshi_0365: Dshi_0365 - anti-ECFsigma factor, ChrR (RefSeq), at 349,194 to 349,865
_0365
Dshi_0366: Dshi_0366 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 349,872 to 350,441
_0366
Dshi_0367: Dshi_0367 - amine oxidase (RefSeq), at 350,649 to 351,953
_0367
Dshi_0368: Dshi_0368 - protein of unknown function DUF1365 (RefSeq), at 351,950 to 352,708
_0368
Dshi_0369: Dshi_0369 - sodium:galactoside symporter family protein, putative (RefSeq), at 352,726 to 353,964
_0369
Position (kb) 350
351
352 Strain fitness (log2 ratio) -2
-1
0
1
2 at 349.912 kb on - strand at 349.946 kb on - strand, within Dshi_0366 at 350.079 kb on + strand, within Dshi_0366 at 350.082 kb on - strand, within Dshi_0366 at 350.305 kb on + strand, within Dshi_0366 at 350.313 kb on - strand, within Dshi_0366 at 350.313 kb on - strand, within Dshi_0366 at 350.376 kb on - strand, within Dshi_0366 at 350.391 kb on - strand at 350.446 kb on + strand at 350.492 kb on + strand at 350.532 kb on + strand at 350.555 kb on - strand at 350.561 kb on - strand at 350.575 kb on + strand at 350.607 kb on - strand at 350.617 kb on - strand at 350.627 kb on - strand at 350.629 kb on + strand at 350.637 kb on - strand at 350.637 kb on - strand at 350.644 kb on + strand at 350.676 kb on - strand at 350.721 kb on - strand at 350.823 kb on - strand, within Dshi_0367 at 350.866 kb on + strand, within Dshi_0367 at 350.866 kb on + strand, within Dshi_0367 at 350.990 kb on - strand, within Dshi_0367 at 351.006 kb on - strand, within Dshi_0367 at 351.064 kb on + strand, within Dshi_0367 at 351.066 kb on + strand, within Dshi_0367 at 351.113 kb on - strand, within Dshi_0367 at 351.227 kb on - strand, within Dshi_0367 at 351.256 kb on + strand, within Dshi_0367 at 351.269 kb on + strand, within Dshi_0367 at 351.348 kb on - strand, within Dshi_0367 at 351.462 kb on + strand, within Dshi_0367 at 351.522 kb on + strand, within Dshi_0367 at 351.526 kb on + strand, within Dshi_0367 at 351.554 kb on - strand, within Dshi_0367 at 351.560 kb on + strand, within Dshi_0367 at 351.587 kb on + strand, within Dshi_0367 at 351.587 kb on + strand, within Dshi_0367 at 351.595 kb on - strand, within Dshi_0367 at 351.595 kb on - strand, within Dshi_0367 at 351.597 kb on + strand, within Dshi_0367 at 351.597 kb on + strand, within Dshi_0367 at 351.642 kb on + strand, within Dshi_0367 at 351.712 kb on - strand, within Dshi_0367 at 351.768 kb on + strand, within Dshi_0367 at 351.876 kb on + strand at 351.884 kb on - strand at 351.894 kb on - strand at 351.992 kb on + strand at 352.139 kb on + strand, within Dshi_0368 at 352.263 kb on + strand, within Dshi_0368 at 352.271 kb on - strand, within Dshi_0368 at 352.400 kb on - strand, within Dshi_0368 at 352.454 kb on - strand, within Dshi_0368 at 352.454 kb on - strand, within Dshi_0368 at 352.509 kb on - strand, within Dshi_0368 at 352.570 kb on + strand, within Dshi_0368 at 352.653 kb on - strand at 352.674 kb on + strand at 352.706 kb on - strand at 352.833 kb on + strand at 352.833 kb on + strand at 352.835 kb on + strand at 352.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 349,912 - +1.5 349,946 - Dshi_0366 0.13 -0.6 350,079 + Dshi_0366 0.36 -0.1 350,082 - Dshi_0366 0.37 -0.5 350,305 + Dshi_0366 0.76 -0.7 350,313 - Dshi_0366 0.77 -1.9 350,313 - Dshi_0366 0.77 -0.1 350,376 - Dshi_0366 0.88 -0.8 350,391 - +0.1 350,446 + -0.1 350,492 + -0.4 350,532 + +0.0 350,555 - -0.0 350,561 - -0.2 350,575 + +0.4 350,607 - +0.3 350,617 - +0.6 350,627 - +0.7 350,629 + +0.1 350,637 - +0.4 350,637 - -0.9 350,644 + +0.5 350,676 - +0.2 350,721 - -1.1 350,823 - Dshi_0367 0.13 +0.5 350,866 + Dshi_0367 0.17 +0.3 350,866 + Dshi_0367 0.17 +2.3 350,990 - Dshi_0367 0.26 -0.3 351,006 - Dshi_0367 0.27 +0.4 351,064 + Dshi_0367 0.32 +0.7 351,066 + Dshi_0367 0.32 +0.5 351,113 - Dshi_0367 0.36 +0.4 351,227 - Dshi_0367 0.44 +0.4 351,256 + Dshi_0367 0.47 +0.2 351,269 + Dshi_0367 0.48 +0.5 351,348 - Dshi_0367 0.54 -0.2 351,462 + Dshi_0367 0.62 +0.9 351,522 + Dshi_0367 0.67 +0.3 351,526 + Dshi_0367 0.67 +0.6 351,554 - Dshi_0367 0.69 +0.7 351,560 + Dshi_0367 0.70 -0.6 351,587 + Dshi_0367 0.72 +0.4 351,587 + Dshi_0367 0.72 +1.2 351,595 - Dshi_0367 0.72 -0.1 351,595 - Dshi_0367 0.72 +0.4 351,597 + Dshi_0367 0.73 -0.1 351,597 + Dshi_0367 0.73 +0.9 351,642 + Dshi_0367 0.76 -0.1 351,712 - Dshi_0367 0.81 -0.3 351,768 + Dshi_0367 0.86 -0.8 351,876 + +0.9 351,884 - -0.3 351,894 - +0.0 351,992 + +0.2 352,139 + Dshi_0368 0.25 +1.3 352,263 + Dshi_0368 0.41 +0.1 352,271 - Dshi_0368 0.42 +1.4 352,400 - Dshi_0368 0.59 +0.0 352,454 - Dshi_0368 0.66 +0.6 352,454 - Dshi_0368 0.66 +0.9 352,509 - Dshi_0368 0.74 +0.9 352,570 + Dshi_0368 0.82 +0.5 352,653 - +1.5 352,674 + +1.3 352,706 - +1.5 352,833 + -1.2 352,833 + +0.1 352,835 + +0.1 352,849 - -2.6
Or see this region's nucleotide sequence