Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3972

Experiment: aerobic shaking 48 hr copy B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy B
5,171,731	-				+0.2
5,171,752	+				-2.7
5,171,764	-				-1.6
5,171,777	-				-0.0
5,171,780	+				-1.3
5,171,780	+				+2.0
5,171,780	+				-2.0
5,171,963	-				+1.6
5,171,963	-				-1.7
5,171,965	-				-2.3
5,171,966	+				-0.4
5,171,971	+				+0.2
5,171,972	-				-0.9
5,171,976	-				+0.8
5,171,990	-				-1.6
5,172,002	+				-0.8
5,172,004	+				-1.9
5,172,005	-				-1.3
5,172,045	+				-1.6
5,172,066	-				+0.6
5,172,102	+				-0.8
5,172,107	+				-1.2
5,172,118	-				-1.3
5,172,126	-				-2.3
5,172,168	-				-1.1
5,172,195	+		BT3971	0.11	-1.3
5,172,206	-		BT3971	0.13	-0.0
5,172,278	+		BT3971	0.27	-1.4
5,172,281	+		BT3971	0.27	-1.0
5,172,282	-		BT3971	0.27	-0.8
5,172,346	+		BT3971	0.39	-1.9
5,172,355	-		BT3971	0.41	-2.1
5,172,444	-		BT3971	0.57	+2.3
5,172,448	+		BT3971	0.58	-2.6
5,172,456	+		BT3971	0.59	-0.7
5,172,582	+		BT3971	0.83	-1.0
5,172,583	-		BT3971	0.83	-0.3
5,172,674	-				-0.3
5,172,698	-				-0.8
5,172,704	+				+0.4
5,172,705	-				-0.9
5,172,714	-		BT3972	0.11	-3.0
5,172,883	-		BT3972	0.42	-1.2
5,172,956	+		BT3972	0.56	-2.0
5,172,957	-		BT3972	0.56	-1.4
5,172,976	+		BT3972	0.59	-0.8
5,172,976	+		BT3972	0.59	+0.6
5,173,045	-		BT3972	0.72	-3.3
5,173,047	-		BT3972	0.73	-3.9
5,173,047	-		BT3972	0.73	-0.5
5,173,047	-		BT3972	0.73	-1.3
5,173,195	+				+0.6
5,173,196	-				-3.0
5,173,196	-				-2.0
5,173,196	-				-2.2
5,173,278	-				+1.1
5,173,284	-				+0.6
5,173,383	-		BT3973	0.14	-0.0
5,173,383	-		BT3973	0.14	-3.0
5,173,400	-		BT3973	0.15	-1.3
5,173,400	-		BT3973	0.15	-0.8
5,173,413	+		BT3973	0.16	-0.8
5,173,457	-		BT3973	0.20	-0.0
5,173,677	+		BT3973	0.38	-1.3
5,173,679	+				-0.8
5,173,960	+		BT3973	0.61	-2.3
5,174,050	+		BT3973	0.68	-2.9