Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3853

Experiment: aerobic shaking 48 hr copy B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy B
5,011,950	-		BT3852	0.37	-1.1
5,011,965	+		BT3852	0.38	-2.0
5,012,009	+		BT3852	0.42	-0.3
5,012,010	-		BT3852	0.42	-2.1
5,012,157	-		BT3852	0.54	+0.5
5,012,164	+		BT3852	0.55	-2.1
5,012,164	+		BT3852	0.55	+0.1
5,012,165	-		BT3852	0.55	+0.5
5,012,170	-		BT3852	0.55	-1.1
5,012,170	-		BT3852	0.55	-0.9
5,012,281	+		BT3852	0.65	-2.1
5,012,316	+		BT3852	0.68	-1.1
5,012,317	-		BT3852	0.68	-1.1
5,012,337	+		BT3852	0.69	-4.2
5,012,394	+		BT3852	0.74	-1.8
5,012,489	+		BT3852	0.82	+0.3
5,012,572	-		BT3852	0.89	-2.8
5,012,595	-				-0.8
5,012,676	+				-1.3
5,012,682	+				-1.1
5,012,713	+				-2.5
5,012,713	+				-1.8
5,012,717	-				-0.1
5,012,718	+				-1.9
5,012,719	-				-1.8
5,012,722	+				-3.5
5,012,722	+				+1.1
5,012,731	+				-1.8
5,012,732	-				-2.7
5,012,742	+				-1.1
5,012,746	+				+0.8
5,012,924	-				-0.5
5,012,939	+				-1.1
5,012,940	-				+0.8
5,012,969	-				-3.6
5,012,969	-				-1.4
5,012,970	+				-0.5
5,012,970	+				+1.1
5,012,970	+				-2.9
5,012,970	+				+0.3
5,012,970	+				-1.4
5,012,971	-				-2.3
5,012,971	-				-1.8
5,012,971	-				-1.0
5,012,986	+				-0.1
5,012,994	+				+1.5
5,012,999	-				+0.5
5,013,002	-				-2.2
5,013,002	-				+0.5
5,013,008	+				+0.5
5,013,014	+				-2.5
5,013,073	+				+1.5
5,013,074	-				-1.0
5,013,128	-				+0.5
5,013,150	-				-2.4
5,013,151	+				-3.3
5,013,156	-				+1.5
5,013,156	-				-2.6
5,013,156	-				-1.2
5,013,156	-				-1.9
5,013,177	+		BT3853	0.10	-2.2
5,013,178	-		BT3853	0.10	-1.1
5,013,232	+		BT3853	0.12	-2.2
5,013,233	-		BT3853	0.12	-2.2
5,013,235	+		BT3853	0.12	-3.9
5,013,240	+		BT3853	0.13	+0.5
5,013,313	-		BT3853	0.15	-0.8
5,013,315	+		BT3853	0.16	-1.6
5,013,353	-		BT3853	0.17	-0.1
5,013,469	+		BT3853	0.22	-1.5
5,013,469	+		BT3853	0.22	-4.1
5,013,470	-		BT3853	0.22	-2.5
5,013,470	-		BT3853	0.22	-1.6
5,013,481	+		BT3853	0.22	-2.8
5,013,481	+		BT3853	0.22	-0.1
5,013,482	-		BT3853	0.22	-1.5
5,013,557	+		BT3853	0.25	-1.8
5,013,609	+		BT3853	0.27	-1.8
5,013,613	+		BT3853	0.27	-1.4
5,013,613	+		BT3853	0.27	-2.4
5,013,613	+		BT3853	0.27	-1.5
5,013,613	+		BT3853	0.27	+1.5
5,013,620	-		BT3853	0.27	-2.0
5,013,623	-		BT3853	0.28	-1.3
5,013,636	+		BT3853	0.28	-1.7
5,013,658	+		BT3853	0.29	-2.3
5,013,659	-		BT3853	0.29	-0.8
5,013,678	-		BT3853	0.30	-3.6
5,013,768	-		BT3853	0.33	-0.3
5,013,769	+		BT3853	0.33	-1.4
5,013,782	+		BT3853	0.34	-2.8
5,013,782	+		BT3853	0.34	-2.5
5,013,782	+		BT3853	0.34	+1.5
5,013,782	+		BT3853	0.34	+0.2
5,013,783	-		BT3853	0.34	-1.6
5,013,784	+		BT3853	0.34	-0.3
5,013,784	+		BT3853	0.34	-3.3
5,013,785	-		BT3853	0.34	-0.5
5,013,840	-		BT3853	0.36	-0.9
5,013,840	-		BT3853	0.36	+0.5
5,013,869	+		BT3853	0.37	-0.7
5,013,869	+		BT3853	0.37	-0.8
5,013,898	-		BT3853	0.38	-0.1
5,013,941	-		BT3853	0.40	-4.7
5,013,989	-		BT3853	0.42	-0.5
5,014,087	-		BT3853	0.46	-0.8
5,014,116	-		BT3853	0.47	-2.8
5,014,153	+		BT3853	0.48	-1.5
5,014,228	-		BT3853	0.51	-1.3
5,014,302	+		BT3853	0.54	-1.3
5,014,303	-		BT3853	0.54	-0.7
5,014,305	-		BT3853	0.54	-1.1
5,014,317	-		BT3853	0.54	-1.0
5,014,318	+		BT3853	0.55	-1.2
5,014,318	+		BT3853	0.55	-1.0
5,014,318	+		BT3853	0.55	-0.1
5,014,319	-		BT3853	0.55	-3.3
5,014,322	-				-0.8
5,014,322	-		BT3853	0.55	-1.1
5,014,366	-		BT3853	0.56	-2.3
5,014,415	-		BT3853	0.58	+0.2
5,014,471	+		BT3853	0.60	-0.8
5,014,476	-		BT3853	0.61	+0.5
5,014,529	-		BT3853	0.63	-0.5
5,014,639	-		BT3853	0.67	-0.6
5,014,649	-		BT3853	0.67	-2.1
5,014,651	-		BT3853	0.67	+0.5
5,014,664	-		BT3853	0.68	-1.1
5,014,709	-		BT3853	0.70	-0.8
5,014,720	-		BT3853	0.70	-2.8
5,014,761	+		BT3853	0.72	+2.1
5,014,762	-		BT3853	0.72	-0.3
5,014,838	-		BT3853	0.75	-0.5
5,014,873	+		BT3853	0.76	-1.9
5,014,874	-		BT3853	0.76	-2.4
5,014,939	+		BT3853	0.79	-0.7
5,014,940	-		BT3853	0.79	-0.5
5,014,983	+		BT3853	0.80	-0.8
5,015,011	+		BT3853	0.81	-1.5
5,015,011	+		BT3853	0.81	+0.5
5,015,017	+		BT3853	0.82	-2.7
5,015,114	-		BT3853	0.85	-0.7
5,015,133	+		BT3853	0.86	-0.1
5,015,207	+		BT3853	0.89	-1.3
5,015,210	-		BT3853	0.89	-2.2
5,015,220	-		BT3853	0.90	-3.3
5,015,269	+				-1.0
5,015,329	+				+0.3
5,015,330	-				-0.5
5,015,330	-				-0.1
5,015,331	+				-0.9
5,015,332	-				-0.3
5,015,370	-				-1.8
5,015,426	+				-0.1
5,015,427	-				+0.7
5,015,476	-				+1.1
5,015,638	-				-2.4
5,015,693	-				-1.5
5,015,751	-				-1.3
5,015,832	-				+0.5
5,015,834	-				-2.7
5,015,834	-				-0.4
5,015,839	+				-2.0
5,015,841	+				-1.3
5,015,842	-				-1.7
5,015,875	-				-1.7
5,015,939	-				-1.7
5,016,178	+				-2.1
5,016,210	+				-1.7
5,016,210	+				-2.3
5,016,211	-				+1.5
5,016,211	-				-0.3
5,016,216	-				-1.9
5,016,224	+				-2.7
5,016,372	+		BT3854	0.11	-0.8
5,016,373	-		BT3854	0.11	-1.7
5,016,380	-		BT3854	0.11	-2.3
5,016,430	-		BT3854	0.13	-0.5
5,016,484	+		BT3854	0.14	-2.2