Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3789

Experiment: aerobic shaking 48 hr copy B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy B
4,920,992	+		BT3788	0.69	+3.0
4,920,993	-		BT3788	0.69	+1.0
4,921,008	+		BT3788	0.70	-2.3
4,921,036	-		BT3788	0.71	-1.1
4,921,041	+		BT3788	0.71	-1.1
4,921,106	-		BT3788	0.73	-0.2
4,921,122	+		BT3788	0.73	-0.9
4,921,132	-		BT3788	0.74	-0.3
4,921,141	-		BT3788	0.74	+0.8
4,921,177	-		BT3788	0.75	-0.9
4,921,177	-		BT3788	0.75	+0.1
4,921,177	-		BT3788	0.75	-1.1
4,921,177	-		BT3788	0.75	+0.4
4,921,180	+		BT3788	0.75	-1.6
4,921,189	-		BT3788	0.76	-1.0
4,921,200	-		BT3788	0.76	-1.3
4,921,200	-		BT3788	0.76	-0.7
4,921,200	-		BT3788	0.76	+0.2
4,921,294	-		BT3788	0.79	-1.4
4,921,310	+		BT3788	0.80	-2.9
4,921,310	+		BT3788	0.80	-0.9
4,921,318	-		BT3788	0.80	-0.9
4,921,335	+		BT3788	0.80	-0.6
4,921,345	-		BT3788	0.81	-0.7
4,921,362	+		BT3788	0.81	-2.0
4,921,367	-		BT3788	0.81	-2.0
4,921,377	-		BT3788	0.82	-0.7
4,921,395	+		BT3788	0.82	-1.3
4,921,396	-		BT3788	0.82	-0.8
4,921,407	+		BT3788	0.83	-1.7
4,921,447	+		BT3788	0.84	-0.9
4,921,448	-		BT3788	0.84	+0.4
4,921,448	-		BT3788	0.84	+1.9
4,921,461	-		BT3788	0.84	-2.1
4,921,600	-		BT3788	0.89	-0.1
4,921,676	-				-1.3
4,921,690	-				+0.4
4,921,733	-				-0.1
4,921,742	+				-0.6
4,921,804	-				+1.1
4,921,925	-				-1.6
4,921,977	+				-2.6
4,921,978	-				-0.4
4,921,979	+				-0.1
4,921,982	+				+1.4
4,921,985	-				-0.9
4,921,986	+				+0.6
4,921,987	-				-2.1
4,921,998	+				-0.6
4,922,032	+				+0.2
4,922,036	-				-2.0
4,922,036	-				+1.0
4,922,049	-				+2.2
4,922,092	+				-1.8
4,922,092	+				-0.5
4,922,125	+				+0.8
4,922,126	-				-0.6
4,922,131	-				-0.6
4,922,137	+				-2.0
4,922,138	-				-0.6
4,922,142	+				-1.9
4,922,142	+				-1.4
4,922,151	-				-1.1
4,922,186	+		BT3789	0.11	-2.6
4,922,186	+		BT3789	0.11	+0.2
4,922,283	-		BT3789	0.16	+0.9
4,922,344	+		BT3789	0.19	-0.6
4,922,356	-		BT3789	0.20	+0.4
4,922,363	-		BT3789	0.20	+0.1
4,922,393	+		BT3789	0.22	-0.6
4,922,412	+		BT3789	0.23	+0.0
4,922,412	+		BT3789	0.23	-1.2
4,922,438	-		BT3789	0.24	-0.3
4,922,454	+		BT3789	0.25	-0.9
4,922,495	-		BT3789	0.27	-0.6
4,922,512	-				-0.1
4,922,512	-		BT3789	0.28	-1.4
4,922,512	-		BT3789	0.28	-0.4
4,922,516	-		BT3789	0.28	-1.7
4,922,628	+		BT3789	0.34	+1.4
4,922,628	+		BT3789	0.34	-1.1
4,922,632	-		BT3789	0.34	-2.1
4,922,637	-		BT3789	0.34	+0.0
4,922,652	+		BT3789	0.35	-2.0
4,922,654	+		BT3789	0.35	-1.4
4,922,683	-		BT3789	0.36	-2.1
4,922,686	-		BT3789	0.36	-0.1
4,922,689	+		BT3789	0.37	-1.4
4,922,693	-		BT3789	0.37	-0.9
4,922,720	+		BT3789	0.38	-1.7
4,922,732	-		BT3789	0.39	-0.6
4,922,811	+		BT3789	0.43	+0.1
4,922,818	+		BT3789	0.43	-0.9
4,922,837	-		BT3789	0.44	+1.4
4,922,841	-		BT3789	0.44	+1.4
4,922,841	-		BT3789	0.44	-0.8
4,922,865	-		BT3789	0.46	+0.0
4,922,870	-		BT3789	0.46	+0.2
4,922,870	-		BT3789	0.46	-0.9
4,922,921	-		BT3789	0.48	-0.7
4,923,001	+		BT3789	0.52	-0.9
4,923,004	+		BT3789	0.53	+0.1
4,923,028	-		BT3789	0.54	-2.1
4,923,040	-		BT3789	0.54	-1.3
4,923,057	+		BT3789	0.55	-2.1
4,923,058	-		BT3789	0.55	-0.6
4,923,058	-		BT3789	0.55	-2.8
4,923,058	-		BT3789	0.55	-1.4
4,923,058	-		BT3789	0.55	-0.3
4,923,079	+		BT3789	0.56	-1.4
4,923,086	+		BT3789	0.57	+1.0
4,923,137	+		BT3789	0.59	-0.1
4,923,137	+		BT3789	0.59	-1.0
4,923,178	+		BT3789	0.61	+0.1
4,923,196	+		BT3789	0.62	-2.9
4,923,202	+		BT3789	0.63	-0.4
4,923,208	+		BT3789	0.63	-1.5
4,923,209	-		BT3789	0.63	+6.6
4,923,209	-		BT3789	0.63	-1.6
4,923,237	-		BT3789	0.64	-2.1
4,923,245	-		BT3789	0.65	-2.4
4,923,251	+		BT3789	0.65	+0.1
4,923,254	-		BT3789	0.65	+0.4
4,923,318	-		BT3789	0.68	-0.0
4,923,341	-		BT3789	0.70	+0.1
4,923,357	+		BT3789	0.70	-0.1
4,923,371	-		BT3789	0.71	+0.3
4,923,395	+				+1.4
4,923,396	-		BT3789	0.72	-1.5
4,923,398	-		BT3789	0.72	+0.1
4,923,428	+		BT3789	0.74	-1.4
4,923,429	-		BT3789	0.74	-1.0
4,923,429	-		BT3789	0.74	-1.4
4,923,495	+		BT3789	0.77	-0.6
4,923,522	-		BT3789	0.79	-0.7
4,923,528	+		BT3789	0.79	-1.6
4,923,529	-		BT3789	0.79	-1.6
4,923,553	-		BT3789	0.80	+0.8
4,923,589	+		BT3789	0.82	+1.8
4,923,657	-		BT3789	0.86	-0.6
4,923,713	-		BT3789	0.88	-1.5
4,923,769	-				-2.4
4,923,787	+				-0.9
4,923,793	+				+0.6
4,923,805	+				+1.5
4,923,809	+				-0.9
4,923,850	-				-1.1
4,923,853	+				-1.4
4,923,875	+				+0.0
4,923,879	+				+0.6
4,923,954	-				-0.3
4,923,961	+				-0.9
4,923,980	-				-1.4
4,924,002	+				-0.2
4,924,132	+		BT3790	0.17	+0.1
4,924,134	+		BT3790	0.18	-0.5
4,924,134	+		BT3790	0.18	-1.3
4,924,137	+		BT3790	0.18	+0.5
4,924,146	-		BT3790	0.19	+1.0
4,924,154	-		BT3790	0.20	-0.7
4,924,177	+		BT3790	0.22	-4.2
4,924,178	-		BT3790	0.22	-1.4
4,924,178	-		BT3790	0.22	-1.1
4,924,198	-		BT3790	0.24	-0.5
4,924,198	-		BT3790	0.24	-2.1
4,924,203	+		BT3790	0.25	-0.9
4,924,204	-		BT3790	0.25	-1.1
4,924,229	-		BT3790	0.27	-1.0
4,924,266	+		BT3790	0.31	-1.9
4,924,316	-		BT3790	0.36	+0.1
4,924,333	-		BT3790	0.38	-0.5
4,924,346	+		BT3790	0.39	-0.4
4,924,347	-		BT3790	0.39	+0.1
4,924,349	-		BT3790	0.40	+0.5
4,924,349	-		BT3790	0.40	-0.9
4,924,351	-		BT3790	0.40	-0.1
4,924,400	+		BT3790	0.45	+1.5
4,924,401	-		BT3790	0.45	-1.9
4,924,401	-		BT3790	0.45	-1.0
4,924,404	+		BT3790	0.45	-0.1
4,924,404	+		BT3790	0.45	-0.0
4,924,457	+		BT3790	0.51	-1.1
4,924,468	-		BT3790	0.52	+0.7
4,924,478	-		BT3790	0.53	-2.9
4,924,478	-		BT3790	0.53	+0.1
4,924,478	-		BT3790	0.53	+1.1
4,924,509	-		BT3790	0.56	-0.9
4,924,528	-		BT3790	0.58	-1.1
4,924,573	+		BT3790	0.63	+1.5
4,924,574	-		BT3790	0.63	-0.5
4,924,577	+		BT3790	0.63	-0.5
4,924,578	-		BT3790	0.63	-0.1
4,924,578	-		BT3790	0.63	+0.5
4,924,583	-		BT3790	0.64	-0.6
4,924,594	+		BT3790	0.65	-1.7
4,924,595	-		BT3790	0.65	-0.1
4,924,601	+		BT3790	0.66	-0.5
4,924,602	-		BT3790	0.66	+2.0
4,924,604	-		BT3790	0.66	-1.5
4,924,648	-		BT3790	0.70	-1.0
4,924,653	-		BT3790	0.71	-1.1
4,924,653	-		BT3790	0.71	+1.5
4,924,653	-		BT3790	0.71	-0.6
4,924,688	-		BT3790	0.74	+0.3
4,924,788	-		BT3790	0.85	-0.2
4,924,790	-		BT3790	0.85	-1.1
4,924,790	-		BT3790	0.85	-0.1
4,924,790	-		BT3790	0.85	-1.1
4,924,824	-		BT3790	0.88	-0.2
4,924,824	-		BT3790	0.88	-0.5
4,924,840	+				+1.5
4,924,841	-				-1.1
4,924,843	+				+1.5
4,924,844	-				-1.7
4,924,844	-				-1.7
4,924,888	+				-1.4
4,924,896	+				-1.6