Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3435

Experiment: aerobic shaking 48 hr copy B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy B
4,425,287	-		BT3434	0.23	-1.4
4,425,314	-		BT3434	0.25	-0.7
4,425,314	-		BT3434	0.25	-0.4
4,425,337	-		BT3434	0.27	-2.2
4,425,339	+		BT3434	0.27	-2.2
4,425,347	-		BT3434	0.28	-1.0
4,425,380	+		BT3434	0.30	+0.3
4,425,380	+		BT3434	0.30	-2.2
4,425,380	+		BT3434	0.30	+1.5
4,425,437	-		BT3434	0.35	-0.3
4,425,437	-		BT3434	0.35	-0.7
4,425,437	-		BT3434	0.35	-0.7
4,425,497	-		BT3434	0.40	-2.2
4,425,497	-		BT3434	0.40	-1.7
4,425,674	+		BT3434	0.54	-1.6
4,425,674	+		BT3434	0.54	-2.3
4,425,675	-		BT3434	0.54	-2.5
4,425,675	-		BT3434	0.54	-1.3
4,425,685	-		BT3434	0.55	-1.3
4,425,697	-		BT3434	0.56	-2.7
4,425,731	-		BT3434	0.59	-1.5
4,425,731	-		BT3434	0.59	-1.5
4,425,731	-		BT3434	0.59	-1.3
4,425,735	-		BT3434	0.59	-0.7
4,425,765	-		BT3434	0.62	-1.4
4,425,804	+		BT3434	0.65	-0.8
4,425,805	-		BT3434	0.65	-2.0
4,425,839	+		BT3434	0.68	-1.0
4,425,839	+		BT3434	0.68	-0.2
4,425,839	+		BT3434	0.68	-2.1
4,425,840	-		BT3434	0.68	+0.3
4,425,877	+		BT3434	0.71	-1.0
4,425,878	-		BT3434	0.71	-1.0
4,425,925	-		BT3434	0.75	+2.0
4,425,927	+		BT3434	0.75	-0.7
4,425,937	+		BT3434	0.75	-2.1
4,425,937	+		BT3434	0.75	+1.3
4,425,939	+		BT3434	0.76	+1.7
4,425,940	-		BT3434	0.76	-1.6
4,425,947	+		BT3434	0.76	-1.0
4,425,966	+		BT3434	0.78	-1.7
4,425,966	+		BT3434	0.78	-1.4
4,425,966	+		BT3434	0.78	-2.9
4,425,967	-		BT3434	0.78	-1.3
4,425,968	+		BT3434	0.78	-1.4
4,425,969	-		BT3434	0.78	-2.1
4,426,053	+		BT3434	0.85	-0.9
4,426,053	+		BT3434	0.85	-0.1
4,426,074	+		BT3434	0.87	-2.7
4,426,075	-		BT3434	0.87	-1.1
4,426,079	+		BT3434	0.87	-1.3
4,426,079	+		BT3434	0.87	-1.3
4,426,081	+		BT3434	0.87	-2.4
4,426,081	+		BT3434	0.87	-0.3
4,426,081	+		BT3434	0.87	-3.6
4,426,082	-		BT3434	0.87	+0.3
4,426,082	-		BT3434	0.87	+1.1
4,426,083	+		BT3434	0.87	-1.6
4,426,083	+		BT3434	0.87	-1.0
4,426,096	-		BT3434	0.88	-3.3
4,426,115	+		BT3434	0.90	-0.5
4,426,115	+		BT3434	0.90	-1.2
4,426,133	-				-1.4
4,426,176	+				-2.5
4,426,219	-				+0.1
4,426,219	-				-0.3
4,426,249	+				-0.9
4,426,281	+				-1.8
4,426,281	+				-0.3
4,426,282	-				+0.5
4,426,285	+				-0.7
4,426,296	+				-3.6
4,426,302	-				+0.3
4,426,314	+				-2.3
4,426,355	-		BT3435	0.22	-0.7
4,426,358	+		BT3435	0.23	-2.7
4,426,359	-		BT3435	0.24	-2.8
4,426,362	+		BT3435	0.25	-1.5
4,426,362	+		BT3435	0.25	-2.7
4,426,373	+		BT3435	0.28	-1.0
4,426,374	-		BT3435	0.28	-1.9
4,426,383	-		BT3435	0.31	-1.8
4,426,435	-		BT3435	0.47	-1.8
4,426,443	+		BT3435	0.50	+0.1
4,426,444	-		BT3435	0.50	-2.3
4,426,501	+		BT3435	0.68	-0.7
4,426,502	-		BT3435	0.69	-2.0
4,426,506	+		BT3435	0.70	-2.2
4,426,576	-				-0.3
4,426,578	-				-1.3
4,426,593	-				-1.9
4,426,602	-				+0.6
4,426,602	-				-3.3
4,426,611	+				-3.2
4,426,645	+				-0.5
4,426,647	+				-0.7
4,426,722	+				-1.8
4,426,723	-				-1.8
4,426,723	-				-1.1
4,426,733	-				+0.0
4,426,747	-				-1.1
4,426,747	-				-3.0
4,426,789	-				-3.5
4,426,797	-				+0.1
4,426,900	-				+0.1
4,426,938	+				-0.7
4,426,938	+				-1.0
4,426,946	-				-0.4
4,426,949	+				-1.7
4,426,950	-				-1.0
4,426,974	-				-1.5
4,426,995	+				-1.3
4,427,002	-				-2.6
4,427,002	-				-2.0
4,427,033	+				-1.3
4,427,034	-				-0.6
4,427,038	+				-1.1
4,427,040	+				-0.3
4,427,040	+				-0.5
4,427,040	+				-0.4
4,427,079	-				-1.7
4,427,128	+				-1.3
4,427,128	+				-3.0
4,427,129	-				+0.0
4,427,129	-				+0.3
4,427,129	-				-0.9
4,427,129	-				-1.5
4,427,148	+				-2.3
4,427,153	+				-0.7
4,427,177	+		BT3436	0.11	-1.5
4,427,177	+		BT3436	0.11	-0.8
4,427,178	-		BT3436	0.12	+2.3
4,427,193	-		BT3436	0.15	+0.8
4,427,199	+		BT3436	0.17	-1.3
4,427,199	+		BT3436	0.17	-2.5
4,427,200	-		BT3436	0.17	-3.3
4,427,200	-		BT3436	0.17	-2.8
4,427,214	-		BT3436	0.20	-2.0
4,427,265	-		BT3436	0.32	+0.3
4,427,265	-		BT3436	0.32	-1.6
4,427,274	-		BT3436	0.34	-2.5
4,427,274	-		BT3436	0.34	-2.3
4,427,276	-		BT3436	0.34	-1.6
4,427,286	+		BT3436	0.37	+0.3
4,427,293	+		BT3436	0.38	-0.3
4,427,297	+		BT3436	0.39	+1.3
4,427,298	-		BT3436	0.39	+2.8
4,427,349	+		BT3436	0.51	-2.3
4,427,349	+		BT3436	0.51	+0.3
4,427,349	+		BT3436	0.51	-2.5
4,427,359	-		BT3436	0.53	+1.3
4,427,360	-		BT3436	0.54	-1.5
4,427,372	+		BT3436	0.56	+0.6
4,427,372	+		BT3436	0.56	-0.7
4,427,426	-		BT3436	0.69	-0.1
4,427,490	+		BT3436	0.83	-1.7
4,427,490	+		BT3436	0.83	-2.4
4,427,548	-				-5.0
4,427,555	-				-0.9
4,427,555	-				-1.5
4,427,555	-				+1.0
4,427,566	-				+0.0
4,427,599	+				-1.9
4,427,599	+				-1.3