Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3243

Experiment: aerobic shaking 48 hr copy B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy B
4,139,011	+				-0.9
4,139,069	-				-1.7
4,139,083	+				-3.8
4,139,083	+				+0.1
4,139,083	+				+0.3
4,139,087	+				-1.2
4,139,087	+				-1.4
4,139,094	+				-1.1
4,139,128	+				-3.7
4,139,188	+		BT3242	0.13	-3.2
4,139,216	-		BT3242	0.16	-1.6
4,139,216	-		BT3242	0.16	+0.8
4,139,219	+		BT3242	0.16	-3.5
4,139,221	+		BT3242	0.17	-1.6
4,139,222	-		BT3242	0.17	-0.4
4,139,222	-		BT3242	0.17	+0.9
4,139,234	-		BT3242	0.18	-3.7
4,139,234	-		BT3242	0.18	-0.4
4,139,250	-		BT3242	0.20	-0.4
4,139,255	-		BT3242	0.20	-0.4
4,139,309	-		BT3242	0.26	-0.4
4,139,333	-		BT3242	0.29	-2.4
4,139,343	+		BT3242	0.30	-2.6
4,139,343	+		BT3242	0.30	-2.0
4,139,343	+		BT3242	0.30	-2.2
4,139,343	+		BT3242	0.30	-0.7
4,139,343	+		BT3242	0.30	-0.1
4,139,344	-		BT3242	0.30	-1.4
4,139,358	-		BT3242	0.32	-2.0
4,139,358	-		BT3242	0.32	-0.9
4,139,358	-		BT3242	0.32	-0.7
4,139,359	+		BT3242	0.32	-1.1
4,139,360	-		BT3242	0.32	-0.7
4,139,393	+		BT3242	0.35	-2.1
4,139,437	+		BT3242	0.40	-2.9
4,139,437	+		BT3242	0.40	-0.8
4,139,547	-		BT3242	0.52	-1.8
4,139,581	+		BT3242	0.56	-0.6
4,139,581	+		BT3242	0.56	-0.8
4,139,582	-		BT3242	0.56	-2.1
4,139,582	-		BT3242	0.56	-0.8
4,139,604	-		BT3242	0.58	-2.1
4,139,604	-		BT3242	0.58	-0.8
4,139,657	+		BT3242	0.64	-2.1
4,139,661	+		BT3242	0.65	-0.2
4,139,661	+		BT3242	0.65	-2.5
4,139,773	+		BT3242	0.77	-1.0
4,139,783	+		BT3242	0.78	+0.6
4,139,783	+		BT3242	0.78	+0.9
4,139,783	+		BT3242	0.78	-2.0
4,139,783	+		BT3242	0.78	+0.6
4,139,784	-		BT3242	0.78	-2.4
4,139,784	-		BT3242	0.78	-3.4
4,139,784	-		BT3242	0.78	-1.8
4,139,784	-		BT3242	0.78	-0.9
4,139,816	-		BT3242	0.82	-3.4
4,139,852	-		BT3242	0.86	-1.9
4,139,869	+		BT3242	0.87	-0.5
4,139,874	+		BT3242	0.88	-1.5
4,139,882	+		BT3242	0.89	-0.9
4,139,906	-				+0.2
4,139,934	+				-2.8
4,139,968	-				-0.4
4,139,973	-				+1.2
4,140,036	+				-0.6
4,140,151	+		BT3243	0.12	-2.4
4,140,152	-		BT3243	0.12	-0.0
4,140,173	+		BT3243	0.13	-1.4
4,140,174	-		BT3243	0.13	-0.4
4,140,174	-		BT3243	0.13	-0.2
4,140,204	+		BT3243	0.16	+1.5
4,140,275	-		BT3243	0.21	+0.8
4,140,288	-		BT3243	0.22	+1.2
4,140,314	-		BT3243	0.24	-0.6
4,140,320	-		BT3243	0.24	-0.3
4,140,320	-		BT3243	0.24	-2.3
4,140,332	+		BT3243	0.25	-1.6
4,140,332	+		BT3243	0.25	-4.5
4,140,333	-		BT3243	0.25	-1.0
4,140,333	-		BT3243	0.25	+0.5
4,140,353	+		BT3243	0.27	-1.1
4,140,353	+		BT3243	0.27	+0.8
4,140,354	-		BT3243	0.27	+0.5
4,140,354	-		BT3243	0.27	+1.2
4,140,354	-		BT3243	0.27	-0.6
4,140,419	-		BT3243	0.32	-0.5
4,140,419	-		BT3243	0.32	-1.0
4,140,420	+		BT3243	0.32	-0.8
4,140,421	-		BT3243	0.32	-1.1
4,140,447	+		BT3243	0.34	-1.4
4,140,481	-		BT3243	0.36	-0.8
4,140,485	+		BT3243	0.37	+1.5
4,140,518	+		BT3243	0.39	-1.1
4,140,518	+		BT3243	0.39	-0.5
4,140,519	-		BT3243	0.39	+0.4
4,140,519	-		BT3243	0.39	-1.4
4,140,519	-		BT3243	0.39	-1.0
4,140,520	+		BT3243	0.39	-1.1
4,140,521	-		BT3243	0.39	-0.4
4,140,521	-		BT3243	0.39	-2.7
4,140,522	+		BT3243	0.39	-2.0
4,140,561	+		BT3243	0.42	-0.7
4,140,562	-		BT3243	0.42	-1.5
4,140,566	+		BT3243	0.43	-0.4
4,140,617	+		BT3243	0.47	-0.8
4,140,620	-		BT3243	0.47	-1.0
4,140,630	+		BT3243	0.48	-1.4
4,140,631	-		BT3243	0.48	-2.5
4,140,635	+		BT3243	0.48	-1.1
4,140,635	+		BT3243	0.48	+0.8
4,140,635	+		BT3243	0.48	-0.2
4,140,635	+		BT3243	0.48	+1.8
4,140,636	-		BT3243	0.48	-0.1
4,140,638	-		BT3243	0.48	-0.8
4,140,729	+		BT3243	0.55	-0.9
4,140,797	-		BT3243	0.60	-3.1
4,140,836	-		BT3243	0.63	-2.0
4,140,839	+		BT3243	0.63	-1.4
4,140,840	-		BT3243	0.63	-1.0
4,140,840	-		BT3243	0.63	-1.4
4,140,848	+		BT3243	0.64	-0.6
4,140,860	+		BT3243	0.65	-0.8
4,140,860	+		BT3243	0.65	-1.9
4,140,860	+		BT3243	0.65	+1.2
4,140,860	+		BT3243	0.65	-1.3
4,140,861	-		BT3243	0.65	-0.2
4,140,882	-		BT3243	0.67	-0.9
4,140,912	+		BT3243	0.69	-0.8
4,140,913	-		BT3243	0.69	-1.1
4,140,919	-		BT3243	0.69	-0.6
4,140,920	+		BT3243	0.69	-0.8
4,140,922	+		BT3243	0.70	-2.1
4,140,922	+		BT3243	0.70	-0.0
4,140,951	-		BT3243	0.72	-0.0
4,140,951	-		BT3243	0.72	-0.2
4,140,952	+		BT3243	0.72	-2.1
4,140,953	-		BT3243	0.72	-1.0
4,140,953	-		BT3243	0.72	-3.7
4,140,977	-		BT3243	0.74	-0.8
4,141,019	-		BT3243	0.77	+0.2
4,141,037	+		BT3243	0.78	-1.6
4,141,038	-		BT3243	0.78	+0.5
4,141,039	+		BT3243	0.78	-1.2
4,141,041	+		BT3243	0.78	-0.8
4,141,063	+		BT3243	0.80	+1.2
4,141,064	-		BT3243	0.80	+1.1
4,141,070	+		BT3243	0.81	-0.7
4,141,071	-		BT3243	0.81	-1.8
4,141,096	+		BT3243	0.83	-1.3
4,141,096	+		BT3243	0.83	-0.4
4,141,096	+		BT3243	0.83	-1.2
4,141,096	+		BT3243	0.83	-0.0
4,141,097	-				-1.1
4,141,100	+		BT3243	0.83	+0.7
4,141,102	+		BT3243	0.83	-2.4
4,141,105	+		BT3243	0.83	-2.2
4,141,106	-		BT3243	0.83	-1.5
4,141,109	+		BT3243	0.84	-1.6
4,141,110	-		BT3243	0.84	-0.4
4,141,147	-		BT3243	0.86	-1.1
4,141,200	+				-0.4
4,141,201	-				-0.8
4,141,221	-				-0.4
4,141,221	-				+0.2
4,141,222	+				-0.0
4,141,253	+				-0.8
4,141,254	-				-1.6
4,141,256	-				-2.0
4,141,256	-				-1.9
4,141,288	+				-1.0
4,141,289	-				-2.8
4,141,293	-				+0.5
4,141,352	-				-0.4
4,141,368	+				-2.3
4,141,443	+				-1.1
4,141,564	+		BT3244	0.21	-1.6
4,141,588	+		BT3244	0.23	-1.2
4,141,588	+		BT3244	0.23	-1.8
4,141,589	-		BT3244	0.23	-0.8
4,141,589	-		BT3244	0.23	-4.4
4,141,592	-		BT3244	0.23	+1.4
4,141,626	+		BT3244	0.27	+1.2
4,141,642	+		BT3244	0.28	-1.6
4,141,659	+		BT3244	0.30	-0.0
4,141,685	+		BT3244	0.32	-1.4
4,141,687	+		BT3244	0.32	+0.6
4,141,700	-		BT3244	0.34	+1.2
4,141,703	+		BT3244	0.34	-1.0
4,141,703	+		BT3244	0.34	-0.2
4,141,770	+		BT3244	0.40	-1.1
4,141,771	-		BT3244	0.40	-0.8
4,141,774	+		BT3244	0.40	-0.8
4,141,806	-		BT3244	0.43	+1.4
4,141,888	+		BT3244	0.51	+0.2
4,141,910	+		BT3244	0.53	-1.4
4,141,910	+		BT3244	0.53	-3.1
4,141,910	+		BT3244	0.53	+0.2
4,141,942	-		BT3244	0.56	+1.2
4,141,979	-		BT3244	0.60	-2.3
4,141,991	-		BT3244	0.61	-1.8
4,142,047	+		BT3244	0.66	+0.4
4,142,057	-		BT3244	0.67	-0.5
4,142,057	-		BT3244	0.67	-1.3
4,142,057	-		BT3244	0.67	-0.8
4,142,058	+		BT3244	0.67	-1.1
4,142,131	-		BT3244	0.74	-1.3
4,142,134	+		BT3244	0.74	-0.1
4,142,193	-		BT3244	0.80	-0.8
4,142,205	+		BT3244	0.81	-1.4
4,142,260	-		BT3244	0.86	-1.8
4,142,291	+		BT3244	0.89	+1.2
4,142,291	+		BT3244	0.89	-3.2
4,142,306	+				-2.0
4,142,306	+				-1.0
4,142,306	+				-0.7
4,142,306	+				-2.8
4,142,307	-				-1.6
4,142,307	-				+1.2
4,142,307	-				-1.9
4,142,307	-				-1.1
4,142,308	+				-1.8
4,142,308	+				-1.5
4,142,308	+				-1.4
4,142,309	-				-1.2
4,142,323	-				-1.6