Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2993

Experiment: aerobic shaking 48 hr copy B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy B
3,773,180	+		BT2992	0.68	+0.1
3,773,180	+		BT2992	0.68	-2.9
3,773,181	-		BT2992	0.68	-2.3
3,773,217	+		BT2992	0.70	-2.2
3,773,273	+		BT2992	0.74	-0.9
3,773,348	+		BT2992	0.80	-1.7
3,773,348	+		BT2992	0.80	-2.2
3,773,404	+		BT2992	0.83	-0.6
3,773,404	+		BT2992	0.83	+0.3
3,773,405	-		BT2992	0.83	-1.5
3,773,450	+		BT2992	0.87	-0.7
3,773,451	-		BT2992	0.87	-2.2
3,773,462	+		BT2992	0.87	-1.5
3,773,465	-		BT2992	0.88	-2.3
3,773,492	-		BT2992	0.89	-1.6
3,773,540	+				-1.7
3,773,634	+				-1.9
3,773,781	-				-2.5
3,773,860	-				+1.6
3,773,915	-				-1.9
3,773,922	+				-0.9
3,773,931	-				-2.4
3,773,957	+				-2.0
3,774,061	+				-2.0
3,774,071	+				-0.5
3,774,091	-				-1.1
3,774,093	+				-3.3
3,774,093	+				-3.3
3,774,093	+				-4.0
3,774,094	-				-1.1
3,774,095	+				-2.0
3,774,116	+				-1.3
3,774,154	-				+1.3
3,774,196	+				-2.9
3,774,196	+				-0.9
3,774,197	-				-0.9
3,774,202	-				-4.6
3,774,206	+				-1.3
3,774,229	+				-2.4
3,774,248	-				+0.3
3,774,422	+		BT2993	0.30	-2.9
3,774,525	+		BT2993	0.43	-3.7
3,774,542	-		BT2993	0.45	-3.0
3,774,606	+		BT2993	0.53	-0.0
3,774,606	+		BT2993	0.53	+2.3
3,774,606	+		BT2993	0.53	-1.3
3,774,707	-		BT2993	0.65	-2.0
3,774,835	-		BT2993	0.81	-1.7
3,774,919	-				-0.7
3,774,963	+				-1.0
3,774,990	-				-0.6
3,775,005	-				-3.0
3,775,020	-				-0.3
3,775,020	-				-3.0
3,775,027	-				-0.3
3,775,029	+				-0.5
3,775,034	-				-0.3
3,775,053	-				-0.3
3,775,053	-				-1.0
3,775,090	-				-3.0
3,775,090	-				-1.3
3,775,090	-				-2.4
3,775,090	-				-0.7
3,775,090	-				-2.0
3,775,186	+				-1.0
3,775,334	+		BT2994	0.40	-4.0
3,775,334	+		BT2994	0.40	+1.0
3,775,335	-		BT2994	0.40	-4.2
3,775,335	-		BT2994	0.40	-0.7
3,775,405	+		BT2994	0.57	-2.0
3,775,406	+		BT2994	0.57	-3.0
3,775,406	-		BT2994	0.57	-0.5
3,775,644	-				+1.7
3,775,644	-				-1.5
3,775,655	-				-3.5
3,775,669	+				+0.3
3,775,671	+				+0.6
3,775,671	+				-1.2
3,775,671	+				-1.1
3,775,672	-				-0.3
3,775,750	+		BT2995	0.13	+0.6
3,775,750	+		BT2995	0.13	-1.7
3,775,795	-		BT2995	0.17	-1.2
3,775,893	+		BT2995	0.25	-1.4
3,775,903	+		BT2995	0.25	-0.7
3,775,969	-		BT2995	0.31	-1.2