Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2808

Experiment: aerobic shaking 48 hr copy B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy B
3,486,774	+		BT2807	0.40	-1.5
3,486,775	-		BT2807	0.40	-0.2
3,486,775	-		BT2807	0.40	-2.6
3,486,837	+		BT2807	0.44	+0.4
3,486,837	+		BT2807	0.44	+0.1
3,486,862	-		BT2807	0.45	+1.4
3,486,904	+		BT2807	0.48	-4.9
3,486,905	-		BT2807	0.48	+2.0
3,486,942	+		BT2807	0.50	+0.2
3,486,945	+		BT2807	0.50	-2.2
3,486,979	+		BT2807	0.53	-1.3
3,486,979	+		BT2807	0.53	-1.0
3,486,980	-		BT2807	0.53	+0.9
3,487,000	+		BT2807	0.54	-1.7
3,487,001	-		BT2807	0.54	-4.2
3,487,020	+		BT2807	0.55	-2.0
3,487,021	-		BT2807	0.55	-0.5
3,487,064	-		BT2807	0.58	-1.3
3,487,064	-		BT2807	0.58	-1.7
3,487,103	+		BT2807	0.60	-1.6
3,487,104	-		BT2807	0.60	+1.4
3,487,125	-		BT2807	0.62	-2.2
3,487,151	-		BT2807	0.63	-2.0
3,487,155	-		BT2807	0.63	-2.7
3,487,174	+		BT2807	0.65	-2.8
3,487,175	-		BT2807	0.65	+0.8
3,487,206	-		BT2807	0.67	-2.2
3,487,210	+		BT2807	0.67	-1.6
3,487,231	+		BT2807	0.68	-1.2
3,487,321	+		BT2807	0.74	-2.8
3,487,328	-		BT2807	0.74	+0.6
3,487,336	-		BT2807	0.75	-0.6
3,487,356	-		BT2807	0.76	-2.9
3,487,358	-		BT2807	0.76	-1.3
3,487,359	+		BT2807	0.76	+0.4
3,487,359	+		BT2807	0.76	-1.6
3,487,359	+		BT2807	0.76	-0.9
3,487,374	+		BT2807	0.77	-0.1
3,487,375	-		BT2807	0.77	-0.3
3,487,399	+		BT2807	0.78	-0.6
3,487,443	+		BT2807	0.81	-1.3
3,487,448	-		BT2807	0.81	-1.4
3,487,448	-		BT2807	0.81	-1.2
3,487,451	-		BT2807	0.82	+0.0
3,487,480	+		BT2807	0.83	-0.9
3,487,481	-		BT2807	0.84	-0.4
3,487,492	-		BT2807	0.84	-1.4
3,487,492	-		BT2807	0.84	+1.8
3,487,500	+				+0.4
3,487,508	-		BT2807	0.85	-1.3
3,487,529	+		BT2807	0.86	-0.5
3,487,531	+		BT2807	0.87	-1.3
3,487,557	+		BT2807	0.88	-0.2
3,487,596	-				-1.2
3,487,596	-				-1.5
3,487,596	-				-1.6
3,487,596	-				+0.4
3,487,615	+				-0.2
3,487,679	-				-0.9
3,487,683	+				-0.2
3,487,729	+				+0.2
3,487,758	+				+1.4
3,487,768	+				-1.6
3,487,769	-				-3.4
3,487,770	+				-0.6
3,487,772	+				+0.8
3,487,772	+				-1.2
3,487,772	+				-1.4
3,487,773	-				-2.9
3,487,773	-				-0.3
3,487,799	+				-2.2
3,487,889	+		BT2808	0.13	+0.4
3,487,889	+		BT2808	0.13	-2.7
3,487,890	-		BT2808	0.13	-0.6
3,487,908	+		BT2808	0.15	-0.8
3,487,945	-		BT2808	0.18	-1.4
3,487,945	-		BT2808	0.18	-0.7
3,487,945	-		BT2808	0.18	+1.1
3,487,950	+		BT2808	0.19	-2.7
3,487,951	-		BT2808	0.19	-1.7
3,487,952	+		BT2808	0.19	-2.4
3,487,952	+		BT2808	0.19	-2.0
3,487,981	+		BT2808	0.22	-1.4
3,487,994	-		BT2808	0.23	-2.3
3,488,022	-		BT2808	0.26	-2.3
3,488,028	-		BT2808	0.26	-0.6
3,488,038	+		BT2808	0.27	-2.6
3,488,039	-		BT2808	0.28	-1.4
3,488,089	-		BT2808	0.32	+1.0
3,488,115	-		BT2808	0.35	-1.7
3,488,142	+		BT2808	0.38	-1.1
3,488,143	-		BT2808	0.38	+0.2
3,488,156	-		BT2808	0.39	-0.2
3,488,169	-		BT2808	0.40	-1.3
3,488,205	-		BT2808	0.44	-1.0
3,488,208	+		BT2808	0.44	-2.3
3,488,208	+		BT2808	0.44	-1.4
3,488,208	+		BT2808	0.44	+0.4
3,488,209	-		BT2808	0.44	-1.6
3,488,209	-		BT2808	0.44	-4.0
3,488,209	-		BT2808	0.44	+0.4
3,488,211	-		BT2808	0.44	-1.1
3,488,267	-		BT2808	0.50	-0.6
3,488,267	-		BT2808	0.50	-2.3
3,488,313	-		BT2808	0.54	-2.7
3,488,313	-		BT2808	0.54	-1.6
3,488,313	-		BT2808	0.54	-1.6
3,488,316	-		BT2808	0.55	-1.7
3,488,335	+		BT2808	0.57	-0.2
3,488,424	+		BT2808	0.65	+1.4
3,488,444	+		BT2808	0.67	-1.5
3,488,444	+		BT2808	0.67	-0.7
3,488,476	-		BT2808	0.71	-1.6
3,488,502	+		BT2808	0.73	-0.2
3,488,502	+		BT2808	0.73	+1.4
3,488,524	+		BT2808	0.75	-0.6
3,488,525	-		BT2808	0.75	-0.9
3,488,527	-		BT2808	0.76	-0.6
3,488,527	-		BT2808	0.76	-3.5
3,488,532	-		BT2808	0.76	-1.9
3,488,549	-		BT2808	0.78	-2.2
3,488,549	-		BT2808	0.78	-3.5
3,488,549	-		BT2808	0.78	-0.4
3,488,643	-		BT2808	0.87	-0.6
3,488,696	-				-0.2
3,488,794	+				-1.6
3,488,799	-				-3.2
3,488,799	-				-2.6
3,488,809	+				+0.1
3,488,810	-				+0.4
3,488,821	-				-1.6
3,488,825	-				-0.6
3,488,828	-				-1.6
3,488,850	+				-0.9
3,488,912	+		BT2809	0.12	-0.7
3,488,912	+		BT2809	0.12	-2.9
3,488,912	+		BT2809	0.12	-1.9
3,488,912	+		BT2809	0.12	+1.4
3,488,913	-		BT2809	0.12	+0.1
3,488,924	+		BT2809	0.13	-1.1
3,489,032	+		BT2809	0.24	-2.5
3,489,032	+		BT2809	0.24	-0.2
3,489,035	-		BT2809	0.24	-0.4
3,489,035	-		BT2809	0.24	+1.4
3,489,035	-		BT2809	0.24	-0.0
3,489,035	-		BT2809	0.24	-4.1
3,489,173	+		BT2809	0.38	+1.4
3,489,253	+		BT2809	0.46	-1.2
3,489,254	-		BT2809	0.46	-1.9
3,489,290	-		BT2809	0.49	+0.4
3,489,308	-		BT2809	0.51	-0.6
3,489,320	-		BT2809	0.52	-3.0
3,489,331	-		BT2809	0.53	-0.6
3,489,416	+		BT2809	0.62	-1.7
3,489,505	-		BT2809	0.71	-2.0
3,489,516	-		BT2809	0.72	-1.7
3,489,585	+		BT2809	0.79	-1.2
3,489,598	-		BT2809	0.80	+0.4
3,489,602	+		BT2809	0.80	-1.2
3,489,603	-		BT2809	0.80	-1.5
3,489,749	-				-1.7
3,489,749	-				-0.6
3,489,751	-				-1.0