Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2683

Experiment: aerobic shaking 48 hr copy B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy B
3,342,934	+				-0.8
3,342,973	+				-1.0
3,342,973	+				-1.1
3,342,973	+				+0.5
3,342,974	-				-1.1
3,342,974	-				+0.5
3,343,018	+				-3.6
3,343,027	+				-3.2
3,343,027	+				-2.3
3,343,051	-				-0.5
3,343,070	+				-2.1
3,343,073	-				-0.8
3,343,073	-				-1.4
3,343,158	+		BT2682	0.18	-0.8
3,343,159	-		BT2682	0.18	-3.7
3,343,166	-		BT2682	0.19	-1.0
3,343,367	+		BT2682	0.42	-2.2
3,343,369	+		BT2682	0.42	+1.1
3,343,512	-		BT2682	0.58	-0.2
3,343,517	+		BT2682	0.59	-0.5
3,343,518	-		BT2682	0.59	-0.1
3,343,519	+		BT2682	0.59	-2.0
3,343,611	-		BT2682	0.70	-1.7
3,343,642	-		BT2682	0.73	+0.2
3,343,692	+		BT2682	0.79	-1.1
3,343,692	+		BT2682	0.79	-2.7
3,343,751	+		BT2682	0.86	-3.6
3,343,884	-				-1.1
3,343,902	-				-0.4
3,343,914	-				-0.4
3,343,931	+				-0.8
3,343,932	-				-3.2
3,343,947	-				-0.5
3,343,948	+				-2.0
3,343,949	-				-1.7
3,343,949	-				-2.2
3,343,961	+				-1.1
3,344,007	+				-2.8
3,344,007	+				-0.5
3,344,008	-				-3.5
3,344,184	+		BT2683	0.20	+1.5
3,344,186	+		BT2683	0.21	-3.0
3,344,187	-		BT2683	0.21	-2.0
3,344,281	-		BT2683	0.27	-3.1
3,344,343	-		BT2683	0.32	+0.5
3,344,449	-		BT2683	0.39	-0.3
3,344,468	+		BT2683	0.41	-3.2
3,344,478	+		BT2683	0.41	-1.3
3,344,574	+		BT2683	0.48	-3.3
3,344,575	-		BT2683	0.48	+1.5
3,344,652	+		BT2683	0.54	-1.8
3,344,652	+		BT2683	0.54	-3.1
3,344,653	-		BT2683	0.54	-2.8
3,344,653	-		BT2683	0.54	-1.7
3,344,669	+		BT2683	0.55	-0.8
3,344,670	-		BT2683	0.55	-2.2
3,344,696	+		BT2683	0.57	-2.0
3,344,696	+		BT2683	0.57	-1.1
3,344,697	-		BT2683	0.57	+0.5
3,344,721	-		BT2683	0.59	-3.6
3,344,721	-		BT2683	0.59	+0.5
3,344,733	+		BT2683	0.60	-2.6
3,344,756	+		BT2683	0.61	-0.5
3,344,840	-		BT2683	0.67	+0.5
3,344,922	+		BT2683	0.73	-0.1
3,344,947	-		BT2683	0.75	-3.5
3,344,950	+		BT2683	0.75	-0.1
3,344,950	+		BT2683	0.75	-1.8
3,344,986	-		BT2683	0.78	-1.7
3,345,039	-		BT2683	0.82	+1.5
3,345,104	-		BT2683	0.86	+0.5
3,345,267	-				-0.8
3,345,276	-				-2.6
3,345,297	+				-2.5
3,345,300	-				-1.7
3,345,310	-				-2.6
3,345,466	+		BT2684	0.73	+0.1
3,345,471	+		BT2684	0.76	-2.1
3,345,478	-		BT2684	0.79	-2.5
3,345,553	-		BT2685	0.13	-0.7
3,345,574	-		BT2685	0.20	-1.6
3,345,594	-		BT2685	0.27	-1.5
3,345,615	-		BT2685	0.34	-2.1
3,345,650	+		BT2685	0.46	+0.8
3,345,651	-		BT2685	0.46	-1.8
3,345,810	-				+0.3
3,345,846	-				-1.1
3,345,891	-				-0.3
3,345,891	-				+0.6
3,345,965	+				+0.9
3,346,067	+				-1.5
3,346,067	+				+0.2
3,346,162	+		BT2686	0.11	-0.4
3,346,179	-		BT2686	0.11	+0.3
3,346,230	+		BT2686	0.13	+1.7