Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2593

Experiment: aerobic shaking 48 hr copy B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy B
3,233,790	+		BT2591	0.49	-0.8
3,233,791	-		BT2591	0.49	-2.8
3,233,846	+		BT2591	0.64	-0.9
3,233,846	+				-0.8
3,233,851	+		BT2591	0.66	-1.4
3,233,852	-		BT2591	0.66	-0.4
3,233,852	-		BT2591	0.66	-0.8
3,233,886	+		BT2591	0.75	+1.6
3,233,935	-		BT2591	0.89	-1.6
3,233,935	-		BT2591	0.89	-0.2
3,233,941	-				-0.0
3,233,953	+				-1.6
3,233,953	+				-1.3
3,233,954	-				-1.0
3,233,973	+				-1.8
3,233,976	+				-0.1
3,233,976	+				-2.4
3,233,994	+				-0.4
3,233,995	-				-0.0
3,233,999	+				-1.8
3,233,999	+				+2.6
3,233,999	+				-1.5
3,233,999	+				-2.3
3,234,000	-				+0.6
3,234,000	-				-1.8
3,234,000	-				-0.0
3,234,000	-				-1.0
3,234,000	-				-1.1
3,234,000	-				-2.0
3,234,000	-				+0.3
3,234,000	-				-3.8
3,234,000	-				-1.4
3,234,001	+				-1.0
3,234,027	-				-0.9
3,234,031	+				-1.6
3,234,036	+				+0.6
3,234,037	-				-1.8
3,234,151	-		BT2592	0.10	-0.8
3,234,247	+		BT2592	0.23	-0.4
3,234,248	-		BT2592	0.23	-2.5
3,234,255	+		BT2592	0.24	-0.5
3,234,318	+		BT2592	0.33	-2.1
3,234,318	+		BT2592	0.33	-2.4
3,234,318	+		BT2592	0.33	-1.6
3,234,319	-		BT2592	0.33	-1.6
3,234,321	+		BT2592	0.33	-1.0
3,234,322	-		BT2592	0.33	-0.9
3,234,322	-		BT2592	0.33	-1.7
3,234,524	+		BT2592	0.61	-3.0
3,234,524	+		BT2592	0.61	-1.3
3,234,552	+		BT2592	0.65	-0.7
3,234,578	+		BT2592	0.68	-0.8
3,234,579	-		BT2592	0.68	-1.6
3,234,579	-		BT2592	0.68	-0.9
3,234,579	-		BT2592	0.68	-1.6
3,234,581	-		BT2592	0.69	-1.7
3,234,581	-		BT2592	0.69	-0.9
3,234,583	-		BT2592	0.69	+0.6
3,234,659	+		BT2592	0.79	-1.6
3,234,659	+		BT2592	0.79	+0.7
3,234,717	+		BT2592	0.87	-0.4
3,234,717	+		BT2592	0.87	-0.6
3,234,846	-		BT2593	0.19	-2.8
3,234,899	-		BT2593	0.29	-2.1
3,234,899	-		BT2593	0.29	+0.6
3,234,902	-		BT2593	0.30	+0.1
3,234,927	+		BT2593	0.35	-1.6
3,235,001	-		BT2593	0.50	-1.4
3,235,012	+		BT2593	0.53	-0.3
3,235,107	+		BT2593	0.72	+0.6
3,235,192	-		BT2593	0.90	+0.6
3,235,235	+				-1.8
3,235,236	-				-2.8
3,235,242	+				-0.7
3,235,244	+				+1.6
3,235,251	+				-0.5
3,235,279	-				-3.9
3,235,387	-		BT2594	0.25	-2.8
3,235,527	+		BT2594	0.49	-0.8
3,235,546	+		BT2594	0.52	-0.2
3,235,548	+		BT2594	0.52	-2.2
3,235,564	+		BT2594	0.55	-0.5
3,235,570	+		BT2594	0.56	-2.1
3,235,573	+		BT2594	0.56	-1.2
3,235,678	+		BT2594	0.74	-2.1
3,235,678	+		BT2594	0.74	-1.2
3,235,789	+				-1.4
3,235,831	+				-1.6
3,235,916	+				-0.1
3,235,917	-				+0.2
3,235,977	+		BT2595	0.16	-0.4
3,236,013	-		BT2595	0.20	-0.1
3,236,033	+		BT2595	0.22	+0.6
3,236,034	-		BT2595	0.22	-1.4
3,236,058	+		BT2595	0.25	-2.9
3,236,142	+		BT2595	0.34	-1.8
3,236,172	-		BT2595	0.37	-1.1
3,236,208	+		BT2595	0.41	-1.5
3,236,218	-		BT2595	0.42	-0.7