Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2524

Experiment: aerobic shaking 48 hr copy B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy B
3,150,584	+		BT2523	0.71	-2.0
3,150,585	-		BT2523	0.71	-1.2
3,150,628	-		BT2523	0.73	-1.5
3,150,628	-		BT2523	0.73	-0.7
3,150,659	-		BT2523	0.74	-0.0
3,150,663	+		BT2523	0.74	-0.7
3,150,663	+		BT2523	0.74	+0.3
3,150,663	+		BT2523	0.74	-0.8
3,150,663	+		BT2523	0.74	-2.5
3,150,675	-		BT2523	0.74	-2.7
3,150,675	-		BT2523	0.74	+2.6
3,151,007	+		BT2523	0.84	-0.6
3,151,053	+		BT2523	0.85	-1.0
3,151,053	+		BT2523	0.85	+0.2
3,151,053	+		BT2523	0.85	-2.5
3,151,054	-		BT2523	0.85	-3.0
3,151,055	+		BT2523	0.85	+0.8
3,151,058	+		BT2523	0.85	+0.6
3,151,058	+		BT2523	0.85	+0.6
3,151,058	+		BT2523	0.85	+2.0
3,151,059	-		BT2523	0.85	-3.2
3,151,080	-		BT2523	0.86	-1.8
3,151,158	+		BT2523	0.88	-1.3
3,151,162	+		BT2523	0.88	-1.4
3,151,183	-		BT2523	0.89	-0.9
3,151,202	-		BT2523	0.89	+1.6
3,151,202	-		BT2523	0.89	-2.6
3,151,234	-				+0.6
3,151,240	+				-2.8
3,151,303	+				+0.2
3,151,424	-				-0.8
3,151,444	+				-1.5
3,151,445	-				-1.5
3,151,520	-				-0.9
3,151,523	-				-1.0
3,151,529	-				-2.1
3,151,591	-				-0.8
3,151,593	-				-1.2
3,151,772	+				-2.1
3,151,773	-				-0.2
3,151,904	+		BT2524	0.12	-1.6
3,151,924	-		BT2524	0.13	-1.0
3,151,948	+		BT2524	0.14	-0.0
3,152,037	-		BT2524	0.17	-1.6
3,152,037	-		BT2524	0.17	+0.1
3,152,132	+		BT2524	0.21	-0.8
3,152,132	+		BT2524	0.21	-0.0
3,152,177	+		BT2524	0.23	-1.4
3,152,260	-		BT2524	0.26	+0.6
3,152,279	+		BT2524	0.26	-0.4
3,152,381	-		BT2524	0.30	-1.9
3,152,447	+		BT2524	0.33	-2.0
3,152,447	+		BT2524	0.33	-2.8
3,152,448	-		BT2524	0.33	-2.8
3,152,462	+		BT2524	0.33	-0.7
3,152,463	-		BT2524	0.33	-0.0
3,152,495	-		BT2524	0.35	-3.4
3,152,575	-		BT2524	0.38	-1.1
3,152,588	-		BT2524	0.38	-0.1
3,152,639	+		BT2524	0.40	+0.3
3,152,639	+		BT2524	0.40	-0.2
3,152,640	-		BT2524	0.40	+0.6
3,152,640	-		BT2524	0.40	-0.0
3,152,640	-		BT2524	0.40	-0.6
3,152,640	-		BT2524	0.40	-1.7
3,152,640	-		BT2524	0.40	-0.3
3,152,643	+		BT2524	0.40	-2.3
3,152,644	-		BT2524	0.40	-0.6
3,152,713	-		BT2524	0.43	+0.6
3,152,759	-		BT2524	0.45	-1.0
3,152,775	+		BT2524	0.45	+1.0
3,152,775	+		BT2524	0.45	+0.1
3,152,776	-		BT2524	0.45	+0.2
3,152,776	-		BT2524	0.45	-3.3
3,152,776	-		BT2524	0.45	-0.8
3,152,777	+				-0.8
3,152,777	+		BT2524	0.45	-0.4
3,152,819	-		BT2524	0.47	-1.6
3,152,889	+		BT2524	0.49	-1.4
3,153,032	+		BT2524	0.55	-0.3
3,153,033	-		BT2524	0.55	-1.0
3,153,115	-		BT2524	0.58	+0.1
3,153,126	+		BT2524	0.58	-1.9
3,153,127	-		BT2524	0.58	-0.4
3,153,127	-		BT2524	0.58	+0.6
3,153,129	-		BT2524	0.59	-2.7
3,153,130	+		BT2524	0.59	-0.7
3,153,131	-		BT2524	0.59	+0.2
3,153,135	-		BT2524	0.59	+0.0
3,153,201	+		BT2524	0.61	-1.8
3,153,237	-		BT2524	0.63	-0.2
3,153,269	-		BT2524	0.64	-2.1
3,153,281	-		BT2524	0.64	-1.3
3,153,281	-		BT2524	0.64	-2.0
3,153,296	+		BT2524	0.65	-2.8
3,153,297	-		BT2524	0.65	+1.0
3,153,306	-		BT2524	0.65	-0.1
3,153,324	+		BT2524	0.66	+0.2
3,153,354	-		BT2524	0.67	-2.1
3,153,357	+		BT2524	0.67	-1.0
3,153,357	+		BT2524	0.67	-1.4
3,153,363	-		BT2524	0.67	-1.4
3,153,373	+		BT2524	0.68	-0.8
3,153,461	+		BT2524	0.71	-2.1
3,153,462	-		BT2524	0.71	-1.0
3,153,472	-		BT2524	0.72	-1.2
3,153,476	-		BT2524	0.72	-0.4
3,153,476	-		BT2524	0.72	-0.3
3,153,478	+		BT2524	0.72	-2.6
3,153,534	-		BT2524	0.74	-0.0
3,153,579	-		BT2524	0.76	-1.0
3,153,598	+		BT2524	0.76	-3.0
3,153,598	+		BT2524	0.76	-0.4
3,153,599	-		BT2524	0.76	-1.2
3,153,600	+		BT2524	0.76	-1.2
3,153,602	+		BT2524	0.76	-1.2
3,153,603	-		BT2524	0.76	-1.7
3,153,603	-		BT2524	0.76	-1.1
3,153,735	+		BT2524	0.81	+2.4
3,153,735	+		BT2524	0.81	-0.8
3,153,736	-		BT2524	0.81	-0.9
3,153,794	+		BT2524	0.84	-1.0
3,153,796	+		BT2524	0.84	-2.1
3,153,941	+		BT2524	0.89	-1.2
3,153,942	-		BT2524	0.89	-2.8
3,153,958	+		BT2524	0.90	-2.6
3,153,989	-				+1.1
3,153,995	-				-0.7
3,153,995	-				-2.8
3,153,995	-				+1.6
3,154,088	-				-0.4
3,154,107	-				-2.1
3,154,180	-				-1.0
3,154,180	-				-1.3
3,154,185	+				-0.0
3,154,186	-				-1.6
3,154,236	-				-2.3
3,154,238	+				+0.6
3,154,249	-				-1.7
3,154,293	+				-1.3
3,154,508	-		BT2525	0.15	-0.1
3,154,513	+		BT2525	0.15	-0.0
3,154,522	-		BT2525	0.16	-0.7
3,154,544	+		BT2525	0.17	-2.7
3,154,545	-		BT2525	0.17	-1.2
3,154,556	+		BT2525	0.18	-0.4
3,154,567	+		BT2525	0.19	-0.2
3,154,691	-		BT2525	0.28	+1.6
3,154,755	+		BT2525	0.33	-0.1
3,154,827	+		BT2525	0.38	-1.5
3,154,827	+		BT2525	0.38	-2.5
3,154,851	+		BT2525	0.40	-1.8
3,154,851	+		BT2525	0.40	-1.5
3,154,875	+		BT2525	0.42	-0.9
3,154,876	-		BT2525	0.42	-0.0
3,154,917	+		BT2525	0.45	-2.7
3,154,918	-		BT2525	0.45	+0.8
3,154,923	+		BT2525	0.45	+2.0
3,154,963	+		BT2525	0.48	-1.7
3,154,963	+		BT2525	0.48	-1.9
3,154,963	+		BT2525	0.48	-2.1
3,155,015	+		BT2525	0.52	+0.6
3,155,015	+		BT2525	0.52	-1.0
3,155,019	+		BT2525	0.52	-2.2
3,155,023	-		BT2525	0.53	-0.4
3,155,053	+		BT2525	0.55	-1.2
3,155,054	-		BT2525	0.55	+0.1
3,155,136	+		BT2525	0.61	-1.4
3,155,169	+		BT2525	0.63	+1.1
3,155,172	+		BT2525	0.64	-2.3
3,155,187	+		BT2525	0.65	-2.5
3,155,187	+		BT2525	0.65	-0.6
3,155,188	-		BT2525	0.65	-3.0
3,155,188	-		BT2525	0.65	-1.8